Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9KPH	62487	2025-05-13	2024-11-22	3.93	4.09	3.97	3.8	0.008	1.22	0.0	0.14	26.76	0.00	2.162	6.65	0.00	0.0	0.0	0.0	—	0.67	0.45	—	4.0	0.006	0.97	0.0	0.05	27.27	0.01	2.131	29.56	0.00	0.0	0.0	0.0	—	2.16	0.73	0.62	—	10618	0	2	498	0	0	0	logfile
✔	9KPE	62485	2025-05-12	2024-11-22	3.35	2.36	3.59	2.1	0.004	0.76	0.0	0.05	15.54	0.00	2.151	20.23	0.00	5.9	94.1	0.0	-0.21	0.72	0.71	2.13	2.1	0.004	0.72	0.0	0.05	16.30	0.00	2.408	15.89	4.39	6.4	93.6	0.0	0.02	1.50	0.72	0.71	2.14	8916	1127	6	0	1	0	0	logfile
✔	9EGo	47992	2025-05-11	2024-11-21	3.2	3.35	3.11	3.4	0.008	1.13	0.0	0.06	11.25	0.01	1.837	2.76	0.34	6.0	93.9	0.1	-4.60	0.66	0.79	3.71	3.4	0.003	0.64	0.0	0.04	14.09	0.00	2.533	2.88	2.85	4.0	96.0	0.0	-1.41	0.67	0.68	0.86	2.38	8469	1110	6	0	1	0	0	logfile
✔	9EGE	47987	2025-05-20	2024-11-21	2.8	3.42	2.90	3.2	0.004	0.58	0.0	0.04	14.54	0.00	1.991	4.63	0.88	3.2	96.8	0.0	1.04	0.59	0.78	2.58	3.2	0.002	0.54	0.0	0.04	15.53	0.00	2.399	3.49	0.58	3.3	96.7	0.0	1.84	0.58	0.61	0.80	2.39	19224	1230	1	0	0	0	9648	logfile
✔	9EGS	47996	2025-05-17	2024-11-21	2.45	2.71	2.44	2.7	0.002	0.48	0.0	0.04	12.60	0.00	2.329	5.61	0.30	1.9	98.1	0.0	0.65	0.73	0.87	4.69	2.7	0.003	0.55	0.0	0.04	14.47	0.00	2.287	8.46	0.36	1.3	98.7	0.0	1.54	0.21	0.74	0.88	4.27	15805	1885	15	0	15	270	0	logfile
✔	9EGT	47997	2025-05-16	2024-11-21	2.57	2.85	2.58	2.8	0.002	0.48	0.0	0.04	12.75	0.00	2.231	5.21	0.67	1.5	98.5	0.0	0.41	0.68	0.87	4.51	2.8	0.003	0.53	0.0	0.04	14.93	0.00	2.214	6.77	1.34	2.0	98.0	0.0	1.71	0.79	0.71	0.88	4.48	14169	1690	15	0	5	269	0	logfile
✔	9KoM	62478	2025-05-09	2024-11-20	3.2	3.48	3.34	3.5	0.004	0.79	0.0	0.04	17.93	0.00	2.245	6.15	0.81	4.6	95.4	0.0	0.32	0.26	0.66	1.35	3.5	0.003	0.55	0.0	0.04	18.55	0.00	2.624	4.17	6.45	3.2	96.8	0.0	1.58	1.24	0.39	0.83	0.94	2268	291	1	0	0	0	0	logfile
✔	9HGR	52165	2025-05-09	2024-11-20	2.7	2.06	2.31	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.002	0.45	0.0	0.05	15.99	0.00	2.647	0.00	6.38	7.5	92.5	0.0	-3.67	0.41	0.27	0.77	6.46	960	142	2	0	0	0	0	logfile
✔	9HH1	52168	2025-05-09	2024-11-20	3.9	4.10	1.62	4.0	0.015	1.45	0.0	0.08	10.77	0.01	1.889	13.25	0.56	2.5	97.5	0.0	-1.27	0.59	0.43	1.23	4.0	0.003	0.91	0.0	0.05	16.47	0.00	2.419	19.96	4.17	2.7	97.3	0.0	-0.54	2.51	0.71	0.64	1.12	3300	412	2	0	0	0	0	logfile
✔	9HGS	52166	2025-05-09	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.47	0.0	0.05	18.05	0.00	2.640	1.85	3.77	8.5	91.5	0.0	-4.24	0.53	0.26	0.76	3.58	526	75	1	0	0	0	0	logfile
✔	9KNW	62464	2025-05-09	2024-11-19	3.41	3.70	3.47	3.7	0.009	0.93	0.0	0.04	19.17	0.00	2.299	14.27	1.48	2.1	97.9	0.0	-1.35	0.53	0.77	1.61	3.7	0.003	0.60	0.0	0.04	17.97	0.00	2.418	10.29	3.33	1.8	98.2	0.0	1.70	0.79	0.51	0.77	1.24	2747	333	5	0	2	0	0	logfile
✔	9KNX	62465	2025-05-09	2024-11-19	3.72	4.01	3.77	4.0	0.011	1.06	0.0	0.06	16.42	0.01	2.250	9.84	0.38	3.7	96.3	0.0	-1.45	0.48	0.70	1.20	4.0	0.003	0.55	0.0	0.04	16.48	0.00	2.470	7.42	1.88	1.9	98.1	0.0	2.53	0.71	0.45	0.71	0.65	2675	329	4	0	1	0	0	logfile
✔	9HGA	52132	2025-05-26	2024-11-19	3.62	4.39	3.87	4.1	0.002	0.44	0.0	0.04	14.83	0.00	2.097	5.96	0.00	2.3	97.7	0.0	1.01	0.73	0.80	2.35	4.1	0.004	0.53	0.0	0.04	15.45	0.00	2.439	5.82	1.18	4.6	95.4	0.0	0.12	0.83	0.74	0.81	2.46	28011	1818	7	0	0	0	13795	logfile
✔	9HG8	52130	2025-05-28	2024-11-19	2.9	3.69	3.11	3.4	0.004	0.65	0.0	0.04	14.78	0.01	2.121	7.23	1.16	3.1	96.7	0.2	0.16	0.71	0.77	2.72	3.5	0.003	0.54	0.0	0.04	15.68	0.00	2.340	3.70	0.86	3.0	97.0	0.0	0.60	0.69	0.72	0.82	2.74	30038	1953	6	0	0	0	14802	logfile
✔	9HG5	52128	2025-05-29	2024-11-19	2.82	3.64	3.04	3.4	0.003	0.59	0.0	0.04	16.43	0.00	1.983	5.41	1.21	3.1	96.8	0.1	0.21	0.70	0.76	2.24	3.4	0.003	0.54	0.0	0.04	16.66	0.00	2.351	3.97	0.92	3.3	96.7	0.0	0.58	0.75	0.72	0.81	3.02	31980	2085	6	0	0	0	15755	logfile
✔	9KNY	62466	2025-05-09	2024-11-19	3.4	3.70	3.34	3.7	0.009	0.93	0.0	0.04	19.44	0.00	2.299	12.28	4.44	2.1	97.9	0.0	-1.33	0.53	0.77	1.61	3.7	0.003	0.57	0.0	0.04	17.79	0.00	2.420	8.49	3.70	1.5	98.5	0.0	1.64	0.96	0.51	0.77	1.01	2747	333	5	0	2	0	0	logfile
✔	9HG7	52129	2025-05-28	2024-11-19	2.83	3.67	3.03	3.4	0.004	0.65	0.0	0.04	14.78	0.01	2.122	7.19	1.16	3.1	96.7	0.2	0.16	0.71	0.77	2.64	3.4	0.002	0.54	0.0	0.04	15.28	0.00	2.292	4.33	0.67	2.7	97.3	0.0	0.43	0.93	0.74	0.83	2.79	30038	1953	6	0	0	0	14802	logfile
✔	9HG6	52127	2025-05-29	2024-11-19	2.73	3.61	2.90	3.3	0.003	0.59	0.0	0.04	16.43	0.00	1.983	5.44	1.21	3.0	96.9	0.1	0.21	0.71	0.78	3.20	3.3	0.002	0.53	0.0	0.04	16.48	0.00	2.291	3.66	0.80	3.1	96.9	0.0	0.62	0.87	0.71	0.79	2.86	31980	2085	6	0	0	0	15755	logfile
✔	9EF0	40857	2025-05-10	2024-11-19	3.33	3.49	3.32	3.5	0.004	0.59	0.0	0.04	16.92	0.00	2.198	10.63	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.4	0.003	0.61	0.0	0.04	17.83	0.00	2.498	10.02	3.44	4.1	95.9	0.0	-0.44	0.81	0.69	0.79	2.27	4993	613	2	0	2	0	0	logfile
✔	9HG9	52131	2025-05-25	2024-11-19	2.88	3.62	3.05	3.4	0.003	0.51	0.0	0.04	13.88	0.00	2.046	4.81	0.28	3.2	96.8	0.0	0.83	0.69	0.81	3.73	3.4	0.003	0.54	0.0	0.04	15.05	0.00	2.119	3.37	0.90	3.4	96.6	0.0	0.75	0.47	0.68	0.81	3.53	26335	1708	8	0	1	0	12929	logfile

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