Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9oPB	70687	2025-06-05	2025-05-17	3.6	3.67	4.75	3.4	0.002	0.44	0.0	0.03	15.83	0.00	2.483	6.92	0.16	0.0	100.0	0.0	6.54	0.35	0.56	0.42	3.5	0.003	0.73	0.0	0.04	18.58	0.00	2.523	18.40	4.29	0.1	99.9	0.0	4.78	3.55	0.37	0.64	-0.05	6145	780	10	0	0	0	0	logfile
✔	9UWD	64550	2025-06-04	2025-05-12	3.41	3.58	3.55	3.6	0.007	1.07	3.0	0.08	9.30	0.01	2.001	10.59	1.39	3.5	96.0	0.5	1.54	0.37	0.56	1.35	3.7	0.003	0.70	0.0	0.04	14.92	0.00	2.510	9.56	5.83	4.5	95.5	0.0	2.54	0.99	0.41	0.69	2.35	3355	428	1	0	0	0	0	logfile
✔	9oC4	70308	2025-06-09	2025-04-23	2.1	2.23	2.18	2.2	0.003	0.56	0.0	0.04	16.37	0.01	2.036	5.86	0.79	2.2	97.8	0.0	1.02	0.67	0.86	4.42	2.2	0.003	0.56	0.0	0.04	16.63	0.00	1.985	4.97	1.84	1.9	98.1	0.0	1.73	0.97	0.67	0.86	4.28	11068	1455	9	0	7	90	0	logfile
✔	9UEQ	64089	2025-06-08	2025-04-09	3.2	3.93	3.26	3.7	0.003	0.66	0.0	0.05	13.44	0.01	2.325	5.00	0.10	8.2	91.6	0.1	-1.64	0.87	0.83	2.95	3.7	0.002	0.59	0.0	0.04	14.70	0.00	2.595	3.50	2.06	7.8	91.9	0.2	-0.61	0.62	0.83	0.83	2.53	10030	1342	5	0	3	3	0	logfile
✔	9o38	70072	2025-06-08	2025-04-06	3.0	3.78	3.02	3.4	0.003	0.56	0.0	0.04	17.71	0.00	2.062	7.07	2.44	2.5	97.5	0.0	1.09	0.67	0.70	1.62	3.5	0.004	0.76	0.0	0.04	17.35	0.00	2.400	10.08	2.44	2.4	97.6	0.0	0.93	0.90	0.69	0.83	2.24	9824	1258	6	0	0	0	0	logfile
✔	9o12	49995	2025-06-15	2025-04-03	4.3	5.06	4.45	4.6	0.003	0.47	0.0	0.04	10.08	0.00	2.105	4.20	1.19	4.3	95.7	0.0	1.53	0.55	0.66	—	4.6	0.003	0.55	0.0	0.04	11.47	0.00	2.280	7.41	0.00	4.8	95.2	0.0	1.36	1.09	0.55	0.76	—	17136	1044	4	0	0	0	8772	logfile
✔	9o11	49994	2025-06-15	2025-04-03	3.3	4.08	3.43	3.9	0.004	0.49	0.0	0.04	13.21	0.00	2.017	3.15	0.11	2.0	98.0	0.0	1.71	0.64	0.84	2.47	3.9	0.002	0.55	0.0	0.03	15.06	0.00	2.326	3.74	1.08	2.0	98.0	0.0	3.14	0.76	0.59	0.85	2.16	17136	1044	4	0	0	0	8772	logfile
✔	9o10	49993	2025-06-14	2025-04-03	3.0	3.74	3.14	3.5	0.003	0.46	0.0	0.04	9.24	0.00	2.209	4.31	0.23	1.9	98.1	0.0	2.37	0.64	0.84	3.37	3.6	0.003	0.61	0.0	0.04	14.70	0.01	2.226	6.13	1.76	2.0	98.0	0.0	3.12	1.33	0.51	0.77	3.07	16488	1044	4	0	0	0	8360	logfile
✔	9QQD	53298	2025-06-05	2025-03-31	3.1	4.12	3.12	3.7	0.014	1.96	9.0	0.09	20.81	0.04	2.429	8.02	13.84	4.7	94.5	0.9	-3.10	0.93	0.90	1.96	3.7	0.003	0.58	0.0	0.04	18.41	0.00	2.563	6.26	2.92	3.5	96.5	0.0	2.85	0.71	0.89	0.84	1.67	4592	579	1	0	0	0	0	logfile
✔	9UAA	63983	2025-06-14	2025-03-31	2.22	2.27	2.14	2.2	0.003	0.66	0.0	0.05	13.04	0.00	2.110	4.53	0.00	3.6	96.4	0.0	0.08	0.70	0.84	4.72	2.2	0.003	0.61	0.0	0.05	14.52	0.00	2.605	3.70	0.67	3.1	96.9	0.0	0.20	0.25	0.71	0.86	4.37	15994	2013	18	0	9	340	0	logfile
✔	9UA9	63982	2025-06-14	2025-03-31	1.99	2.05	1.92	2.0	0.003	0.57	0.0	0.05	10.73	0.00	2.177	1.65	0.11	1.9	98.1	0.0	0.81	0.75	0.86	6.43	2.0	0.003	0.64	0.0	0.05	12.73	0.00	2.492	1.58	0.62	2.1	97.9	0.0	0.80	0.78	0.79	0.90	6.30	16357	2031	24	0	15	553	0	logfile
✔	9QLU	53234	2025-06-04	2025-03-21	2.54	2.32	2.28	2.3	0.004	0.68	0.0	0.04	12.32	0.01	2.367	3.25	0.00	3.4	96.6	0.0	-1.75	0.43	0.88	8.63	2.3	0.006	1.57	1.0	0.06	15.47	0.00	2.498	5.42	1.67	1.9	98.1	0.0	-1.94	0.53	0.41	0.89	8.51	2360	330	5	0	0	0	0	logfile
✔	9NVU	49856	2025-06-15	2025-03-21	2.71	2.14	2.80	2.1	0.017	1.94	1.0	0.10	22.14	0.03	1.835	0.23	0.19	4.7	95.3	0.0	-0.83	0.74	0.71	5.05	2.1	0.006	0.71	0.0	0.04	22.52	0.01	1.746	3.20	2.27	3.2	96.8	0.0	0.42	1.12	0.79	0.81	3.81	17170	603	7	228	6	0	7515	logfile
✔	9NVC	49832	2025-06-19	2025-03-20	2.6	3.07	2.69	3.0	0.004	0.64	0.0	0.05	12.81	0.00	2.235	4.14	0.00	1.7	98.3	0.0	1.03	0.79	0.82	2.53	3.0	0.005	0.70	0.0	0.05	17.30	0.00	2.500	7.40	2.75	1.6	98.4	0.0	1.58	1.59	0.75	0.82	2.59	22488	2904	24	0	0	0	0	logfile
✔	9NU1	49792	2025-06-05	2025-03-19	3.6	4.02	2.94	4.0	0.004	0.87	0.0	0.05	20.81	0.00	2.475	8.03	1.83	4.2	95.8	0.0	-1.71	0.77	0.79	2.04	4.0	0.004	0.85	0.0	0.05	16.89	0.00	2.516	8.83	6.42	4.7	95.3	0.0	-1.55	1.17	0.78	0.80	2.16	5092	628	10	0	15	0	0	logfile
✔	9QH3	53153	2025-06-22	2025-03-14	2.4	3.18	2.71	3.1	0.005	0.83	0.0	0.05	15.21	0.04	2.182	5.24	0.37	3.7	96.3	0.0	-1.39	0.70	0.81	3.72	3.1	0.003	0.57	0.0	0.04	15.99	0.00	2.277	2.58	0.45	2.4	97.6	0.0	1.80	1.04	0.71	0.83	4.45	25636	1684	10	3	0	45	12816	logfile
✔	9M84	63701	2025-06-20	2025-03-11	3.61	3.95	3.79	3.8	0.004	0.78	0.0	0.04	17.91	0.01	1.876	6.19	0.41	7.6	92.3	0.1	-1.95	0.74	0.67	0.95	3.8	0.004	0.76	0.0	0.05	18.80	0.01	1.923	13.88	2.80	6.9	93.1	0.0	-1.27	0.98	0.74	0.67	0.82	24018	2931	8	58	3	0	0	logfile
✔	9NoU	49617	2025-06-06	2025-03-10	2.8	3.00	2.81	3.0	0.004	0.69	0.0	0.05	17.49	0.00	2.394	6.80	1.24	1.1	98.9	0.0	0.16	0.65	0.84	3.03	3.0	0.004	0.61	0.0	0.05	17.63	0.00	2.533	6.26	4.57	0.9	99.1	0.0	0.81	1.00	0.68	0.85	2.77	7519	923	4	0	15	0	0	logfile
✔	9NoR	49608	2025-06-11	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.529	7.28	4.84	2.5	97.5	0.0	0.79	0.31	0.73	0.79	1.26	12555	1565	4	0	16	0	0	logfile
✔	9NoY	49621	2025-06-04	2025-03-10	3.7	3.83	3.57	3.8	0.003	0.61	0.0	0.04	17.43	0.01	2.625	9.70	1.33	2.0	98.0	0.0	1.89	0.48	0.81	1.26	3.8	0.004	0.72	0.0	0.04	18.24	0.01	2.606	11.15	4.89	2.4	97.6	0.0	2.58	0.53	0.50	0.81	1.77	2031	257	1	0	0	0	0	logfile

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