Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EDC	47944	2025-06-04	2024-11-16	4.18	5.14	4.40	5.9	0.005	0.88	0.0	0.05	13.87	0.01	2.263	2.91	0.00	2.5	97.3	0.2	-1.43	0.70	0.54	—	5.8	0.004	0.78	0.0	0.05	14.00	0.00	2.372	16.09	0.24	4.5	95.3	0.2	-0.23	1.81	0.73	0.61	—	4062	498	3	0	1	0	0	logfile
✔	9ED1	47930	2025-06-13	2024-11-15	3.5	3.78	3.45	3.7	0.002	0.49	0.0	0.04	13.06	0.00	2.271	2.96	0.00	2.6	97.4	0.0	-1.17	0.67	0.81	1.84	3.7	0.004	0.56	0.0	0.04	15.50	0.00	2.267	2.14	2.36	3.7	96.3	0.0	-0.37	0.37	0.68	0.83	1.27	15449	2020	14	0	17	0	0	logfile
✔	9HE1	52074	2025-06-20	2024-11-13	3.0	3.47	3.06	3.4	0.002	0.43	0.0	0.04	8.80	0.00	1.521	3.83	0.39	2.7	97.3	0.0	0.63	0.63	0.75	2.65	3.4	0.003	0.55	0.0	0.04	12.07	0.00	2.349	3.87	0.55	5.1	94.9	0.0	-0.28	0.60	0.64	0.77	2.48	23241	1511	6	0	0	0	11404	logfile
✔	9KK6	62383	2025-06-07	2024-11-12	3.7	3.82	3.73	3.8	0.003	0.62	0.0	0.04	15.11	0.00	2.031	8.58	0.00	9.0	91.0	0.0	1.23	0.65	0.80	1.71	3.8	0.003	0.67	0.0	0.04	17.39	0.00	1.926	7.75	2.20	8.4	91.6	0.0	1.08	0.47	0.65	0.81	1.45	9066	1170	2	0	6	0	0	logfile
✔	9KJT	62375	2025-06-14	2024-11-12	3.84	4.76	3.86	4.1	0.006	0.66	0.0	0.04	16.58	0.00	2.198	16.75	0.11	5.4	94.6	0.0	1.01	0.93	0.88	1.61	4.2	0.003	0.58	0.0	0.04	16.99	0.00	2.551	10.68	2.32	3.7	96.3	0.0	1.34	0.32	0.92	0.86	1.61	16413	2130	3	0	0	0	0	logfile
✔	9KJU	62377	2025-06-06	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.71	0.0	0.04	14.95	0.00	2.498	5.92	1.79	7.8	92.1	0.1	1.08	0.68	0.68	0.88	1.58	7398	936	8	0	8	1	0	logfile
✔	9KJR	62372	2025-06-14	2024-11-12	3.86	4.60	—	4.1	0.005	0.63	0.0	0.04	17.74	0.00	2.219	15.63	0.28	6.6	93.4	0.0	0.86	0.93	0.89	1.36	4.1	0.005	0.63	0.0	0.04	18.05	0.00	2.523	11.32	3.15	5.9	94.1	0.0	1.12	0.87	0.93	0.90	1.23	16413	2130	3	0	0	0	0	logfile
✔	9HDD	52061	2025-06-11	2024-11-12	3.62	5.09	3.72	4.0	0.011	1.80	0.0	0.08	14.69	0.01	2.527	1.51	0.14	4.4	95.6	0.0	-2.50	0.88	0.77	-0.32	4.1	0.002	0.58	0.0	0.03	16.21	0.00	2.336	6.61	1.52	1.6	98.0	0.4	3.76	0.96	0.87	0.77	-0.32	12556	818	2	0	0	0	6260	logfile
✔	9KJC	62366	2025-06-08	2024-11-12	3.6	3.85	3.65	3.8	0.003	0.68	0.0	0.04	14.66	0.01	2.206	9.65	0.63	7.7	92.3	0.0	-0.15	0.64	0.77	0.95	3.8	0.003	0.68	0.0	0.04	15.96	0.00	2.461	8.88	1.47	7.8	92.2	0.0	0.15	0.53	0.64	0.80	0.56	9015	1168	2	0	1	0	0	logfile
✔	9HDQ	52072	2025-06-09	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.58	0.0	0.04	20.18	0.00	2.604	2.90	0.74	1.9	98.1	0.0	1.97	3.97	0.68	0.82	3.40	10261	1025	8	85	1	0	0	logfile
✔	9EAP	47839	2025-06-10	2024-11-11	2.7	2.81	2.69	2.9	0.004	0.73	0.0	0.04	18.58	0.00	2.148	8.42	4.25	7.9	92.0	0.1	-1.48	0.19	0.54	0.99	2.8	0.003	0.67	0.0	0.05	17.28	0.01	2.409	5.29	2.68	6.2	93.7	0.1	-1.37	1.86	0.36	0.84	2.79	11883	1534	6	0	3	0	0	logfile
✔	9EAQ	47840	2025-06-10	2024-11-11	2.7	2.85	2.72	2.9	0.002	0.57	0.0	0.04	17.47	0.01	2.279	4.57	4.09	4.8	95.0	0.1	-0.81	0.36	0.78	2.28	2.9	0.003	0.63	0.0	0.05	17.36	0.01	2.432	3.71	3.38	5.0	94.8	0.1	-0.84	0.22	0.35	0.84	2.68	11799	1535	3	0	0	0	0	logfile
✔	9EAU	47846	2025-06-27	2024-11-11	3.06	3.38	3.14	3.3	0.004	0.74	0.0	0.05	12.61	0.01	2.051	2.61	2.00	5.3	94.5	0.2	-0.82	0.50	0.80	3.93	3.3	0.008	0.88	2.0	0.05	14.30	0.00	1.887	5.33	2.57	3.6	96.4	0.0	-0.15	0.62	0.55	0.86	3.29	31779	4138	16	0	2	0	0	logfile
✔	9Ki0	62361	2025-06-17	2024-11-11	2.65	2.91	2.78	2.9	0.004	0.69	0.0	0.04	19.13	0.01	2.030	6.67	2.12	4.0	95.9	0.1	-0.63	0.70	0.83	2.54	2.9	0.003	0.54	0.0	0.04	19.12	0.00	1.830	4.98	2.89	3.1	96.9	0.1	1.39	0.32	0.68	0.82	2.48	19397	2344	6	20	4	0	0	logfile
✔	9KHZ	62360	2025-06-17	2024-11-11	3.03	3.31	3.10	3.3	0.004	0.69	1.0	0.04	18.78	0.01	1.979	12.56	0.67	7.5	92.0	0.4	-1.93	0.76	0.81	2.44	3.3	0.003	0.64	0.0	0.04	18.76	0.00	2.390	7.36	3.32	6.9	92.9	0.1	-0.38	0.45	0.76	0.80	2.26	19432	2343	6	22	2	0	0	logfile
✔	9EAo	47838	2025-06-10	2024-11-11	2.6	2.87	2.56	2.9	0.003	0.62	0.0	0.05	17.27	0.01	2.103	4.31	5.19	5.6	94.2	0.2	-1.14	0.41	0.83	3.50	2.9	0.004	0.70	0.0	0.05	17.26	0.01	2.324	3.50	3.93	5.3	94.5	0.2	-1.02	0.19	0.38	0.84	3.38	11798	1534	6	0	3	0	0	logfile
✔	9EAJ	47833	2025-06-05	2024-11-11	3.2	3.44	3.19	3.4	0.004	0.51	0.0	0.04	12.00	0.00	2.136	7.55	1.78	4.2	95.8	0.0	0.76	0.56	0.81	3.46	3.4	0.003	0.55	0.0	0.04	14.28	0.00	2.560	7.55	2.67	3.3	96.7	0.0	1.23	0.89	0.60	0.82	2.94	5246	662	4	0	0	0	0	logfile
✔	9KHV	62357	2025-06-17	2024-11-11	2.55	2.86	2.71	2.8	0.003	0.53	0.0	0.04	18.58	0.00	2.133	6.45	2.65	3.6	96.4	0.0	0.85	0.74	0.84	2.78	2.8	0.003	0.54	0.0	0.04	18.88	0.00	2.488	4.83	2.56	3.4	96.6	0.0	1.72	0.28	0.74	0.84	2.78	19377	2336	4	24	0	0	0	logfile
✔	9EAH	47831	2025-06-05	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.50	0.0	0.04	13.40	0.00	2.591	5.45	1.19	4.4	95.6	0.0	1.09	0.87	0.55	0.82	3.18	5606	702	5	0	2	0	0	logfile
✔	9EAN	47837	2025-06-10	2024-11-11	2.4	2.52	2.43	4.8	0.006	0.84	0.0	0.05	17.82	0.01	2.091	5.34	2.75	5.5	94.3	0.2	-0.84	0.03	-0.02	0.66	2.5	0.004	0.79	0.0	0.05	17.78	0.01	2.399	5.29	2.12	5.6	94.3	0.1	-0.95	1.40	0.36	0.82	3.02	11798	1535	3	0	0	0	0	logfile

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