Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K27	61992	2025-06-08	2024-10-17	2.68	3.81	3.15	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.30	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.488	7.23	1.69	5.4	94.6	0.0	0.21	1.50	0.67	0.81	2.74	9213	1167	7	0	1	0	0	logfile
✔	9DZV	47339	2025-06-10	2024-10-17	3.27	2.56	3.33	2.1	0.003	0.57	0.0	0.04	14.17	0.00	2.235	12.36	4.33	9.7	90.3	0.0	-0.56	0.80	0.79	2.68	2.1	0.003	0.75	0.0	0.05	14.61	0.00	2.014	12.09	3.84	9.9	90.1	0.0	-0.97	0.46	0.80	0.78	2.15	11502	1431	7	0	12	0	0	logfile
✔	9K23	61988	2025-06-04	2024-10-17	2.6	2.16	2.06	3.0	0.005	0.56	0.0	0.05	13.00	0.00	2.225	5.47	0.00	4.7	95.3	0.0	-3.85	0.43	0.88	6.96	3.0	0.006	0.60	0.0	0.05	17.74	0.00	2.583	3.35	4.17	6.2	93.8	0.0	-2.92	0.37	0.44	0.88	6.72	2772	396	6	0	0	0	0	logfile
✔	9K1C	61971	2025-06-05	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.003	0.58	0.0	0.04	15.39	0.00	2.384	6.34	1.33	2.7	97.3	0.0	1.66	0.39	0.59	0.78	2.40	6611	871	5	0	1	0	0	logfile
✔	9K1D	61972	2025-06-05	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.004	0.65	0.0	0.04	16.81	0.00	2.412	7.07	3.41	2.7	97.3	0.0	0.80	0.38	0.71	0.85	1.31	6892	858	5	0	6	0	0	logfile
✔	9DZ2	47323	2025-06-08	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.346	6.15	2.14	6.7	92.7	0.6	-1.60	0.74	0.76	0.79	2.97	9523	1207	8	0	0	0	0	logfile
✔	9DZ6	47325	2025-06-17	2024-10-15	3.1	3.74	3.18	3.5	0.004	0.49	0.0	0.04	11.85	0.01	1.821	5.04	0.26	2.3	97.6	0.1	2.01	0.82	0.82	3.19	3.5	0.004	0.78	0.0	0.04	13.62	0.00	1.780	3.41	0.79	1.6	98.3	0.1	2.89	0.43	0.82	0.83	2.67	20204	1226	3	0	2	0	10125	logfile
✔	9DYK	47307	2025-06-13	2024-10-14	2.27	2.50	2.38	2.6	0.002	0.53	0.0	0.04	14.11	0.00	2.240	5.29	0.06	0.9	99.1	0.0	1.18	0.68	0.88	5.19	2.6	0.003	0.49	0.0	0.04	14.75	0.00	2.339	5.42	1.04	1.1	98.9	0.0	1.44	0.19	0.64	0.89	5.01	15486	1880	10	0	6	0	0	logfile
✔	9DYL	47308	2025-06-13	2024-10-14	2.6	3.05	2.71	3.0	0.013	1.25	0.0	0.07	14.40	0.01	2.211	13.34	0.00	3.2	96.8	0.0	1.22	0.70	0.92	4.80	3.0	0.003	0.51	0.0	0.04	16.49	0.00	2.267	5.85	1.71	1.2	98.8	0.0	1.62	0.38	0.59	0.86	3.27	15645	1880	10	0	10	0	0	logfile
✔	9DYM	47309	2025-06-14	2024-10-14	2.67	3.00	2.77	3.1	0.013	1.31	0.0	0.08	15.93	0.01	2.088	6.53	2.12	1.5	98.5	0.0	1.40	0.68	0.92	4.06	3.1	0.003	0.51	0.0	0.04	16.66	0.00	2.269	5.24	1.77	1.3	98.7	0.0	1.31	0.88	0.61	0.88	3.49	15629	1880	12	0	10	2	0	logfile
✔	9DYo	47311	2025-06-13	2024-10-14	2.57	2.82	2.58	2.9	0.003	0.45	0.0	0.03	15.83	0.00	1.984	16.88	0.86	1.2	98.8	0.0	1.52	0.65	0.88	4.00	2.9	0.003	0.49	0.0	0.04	16.47	0.00	2.328	7.07	1.10	1.8	98.2	0.0	1.33	0.24	0.62	0.87	3.52	15451	1880	10	0	6	0	0	logfile
✔	9DYH	47304	2025-06-12	2024-10-14	3.15	3.50	3.22	3.5	0.012	1.37	0.0	0.07	15.27	0.01	1.993	8.17	1.64	1.8	98.2	0.0	1.20	0.55	0.79	3.21	3.5	0.003	0.65	0.0	0.04	16.59	0.00	2.306	10.95	1.25	2.9	97.1	0.0	1.43	1.78	0.57	0.79	2.24	14340	1735	10	0	5	0	0	logfile
✔	9DXS	47297	2025-06-13	2024-10-11	3.55	4.09	3.67	4.0	0.011	1.52	0.0	0.19	20.28	0.01	2.217	4.35	0.39	11.0	88.4	0.6	-5.80	0.60	0.82	3.26	4.0	0.004	0.99	0.0	0.07	18.35	0.00	2.181	10.53	4.46	10.8	89.2	0.1	-0.69	3.16	0.63	0.85	2.11	15294	1784	14	0	43	0	0	logfile
✔	9DXM	47291	2025-06-17	2024-10-11	3.2	3.82	3.26	3.6	0.006	0.60	0.0	0.04	11.97	0.00	1.965	3.86	0.00	2.4	97.6	0.0	1.29	0.85	0.87	3.31	3.6	0.002	0.51	0.0	0.04	13.54	0.00	1.913	4.31	0.00	1.7	98.3	0.0	2.50	0.46	0.84	0.85	2.51	20203	1224	3	0	2	0	10147	logfile
✔	9DXA	47283	2025-06-14	2024-10-11	3.4	3.75	3.47	3.7	0.009	0.80	0.0	0.04	15.02	0.00	2.281	4.71	0.23	2.4	97.6	0.0	1.98	0.63	0.79	1.86	3.7	0.003	0.56	0.0	0.04	15.25	0.00	2.280	8.18	3.37	2.8	97.2	0.0	2.23	1.30	0.61	0.80	1.28	16291	1880	12	0	18	0	0	logfile
✔	9JWG	61852	2025-06-10	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.003	0.73	0.0	0.04	17.43	0.01	2.509	10.21	2.75	7.3	92.6	0.1	-0.45	0.49	0.69	0.79	1.40	11647	1456	2	0	0	0	0	logfile
✔	9H1Z	51786	2025-06-09	2024-10-10	3.3	3.72	3.44	3.7	0.015	0.99	2.0	0.05	13.83	0.01	1.599	4.31	0.91	3.1	96.9	0.0	-1.10	0.54	0.66	3.18	3.6	0.011	0.68	0.0	0.04	15.24	0.00	2.447	3.39	1.24	3.5	96.5	0.0	0.97	2.18	0.67	0.80	2.49	10892	1340	3	0	1	0	0	logfile
✔	9DX7	47282	2025-06-14	2024-10-10	3.3	3.69	3.40	3.7	0.010	0.79	0.0	0.04	12.83	0.00	2.254	4.50	0.17	2.0	98.0	0.0	1.85	0.63	0.81	2.53	3.7	0.003	0.56	0.0	0.04	15.22	0.00	2.487	8.48	3.50	2.6	97.4	0.0	2.21	1.63	0.60	0.80	2.03	16238	1873	12	0	18	0	0	logfile
✔	9DWH	47246	2025-06-15	2024-10-09	3.3	3.99	—	3.6	0.004	0.66	1.0	0.04	26.10	0.01	2.246	5.57	0.22	2.1	97.9	0.0	1.85	0.88	0.86	1.36	3.6	0.003	0.57	0.0	0.03	26.51	0.00	2.498	7.23	1.41	3.3	96.7	0.0	2.59	1.02	0.88	0.88	1.20	14653	1085	12	293	0	0	0	logfile
✔	9JVV	61844	2025-06-08	2024-10-09	2.82	3.24	2.83	3.2	0.003	0.67	0.0	0.04	12.39	0.00	2.265	8.46	0.10	3.4	96.6	0.0	-0.66	0.60	0.80	2.20	3.2	0.003	0.57	0.0	0.04	14.69	0.00	2.566	5.75	2.16	3.7	96.3	0.0	1.64	0.43	0.58	0.81	1.29	9405	1245	6	0	3	0	0	logfile

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