Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JoD	61659	2025-06-15	2024-09-24	3.2	3.24	2.96	3.2	0.005	0.69	0.0	0.05	15.83	0.00	2.208	4.49	1.39	4.3	95.7	0.0	-1.39	0.60	0.90	3.25	3.2	0.003	0.55	0.0	0.04	16.24	0.00	2.509	3.53	2.17	3.3	96.7	0.0	-0.48	0.41	0.59	0.90	3.25	16849	2135	7	0	0	0	0	logfile
✔	9DQX	47117	2025-06-26	2024-09-24	3.4	2.45	3.29	2.1	0.004	0.88	0.0	0.06	12.54	0.01	2.196	6.86	0.00	5.9	94.0	0.1	-1.44	0.48	0.74	2.67	2.0	0.003	0.77	0.0	0.05	15.64	0.00	2.382	11.79	3.32	5.9	94.0	0.1	-0.92	0.50	0.49	0.76	2.25	30900	3995	20	0	12	0	0	logfile
✔	9JNT	61626	2025-06-14	2024-09-24	2.7	3.43	2.76	3.1	0.005	0.67	0.0	0.04	26.48	0.00	1.985	10.74	0.00	6.6	93.3	0.1	0.16	0.87	0.85	2.78	3.1	0.006	0.68	0.0	0.04	26.94	0.00	1.902	7.56	3.01	6.4	93.6	0.0	0.69	0.31	0.86	0.85	2.25	16283	1283	12	292	2	0	0	logfile
✔	9JNP	61624	2025-06-13	2024-09-23	2.3	3.23	2.38	2.9	0.008	0.75	0.0	0.04	26.69	0.01	2.067	7.38	1.45	3.8	96.2	0.0	0.83	0.87	0.86	3.01	2.9	0.006	0.61	0.0	0.04	26.28	0.00	2.072	5.56	1.83	2.9	97.1	0.0	1.91	0.28	0.88	0.87	3.03	15781	1221	12	292	2	0	0	logfile
✔	9GV5	51624	2025-06-05	2024-09-22	4.0	4.59	4.06	4.6	0.002	0.52	0.0	0.04	11.20	0.00	2.306	5.31	0.35	6.9	93.1	0.0	0.71	0.63	0.60	—	4.6	0.003	0.60	0.0	0.04	14.40	0.00	2.264	9.15	0.70	8.6	91.4	0.0	0.44	0.89	0.62	0.61	—	5465	355	1	0	0	0	2766	logfile
✔	9JMZ	61616	2025-06-10	2024-09-22	2.91	4.17	2.98	3.5	0.004	0.90	0.0	0.05	14.15	0.00	2.176	5.57	0.78	3.7	96.3	0.0	0.45	0.92	0.90	3.46	3.5	0.003	0.66	0.0	0.04	14.25	0.00	2.494	3.65	1.25	3.7	96.3	0.0	0.30	0.76	0.92	0.90	3.59	12001	1459	12	0	22	0	0	logfile
✔	9JN0	61617	2025-06-10	2024-09-22	2.84	3.91	2.92	3.4	0.003	0.71	0.0	0.05	14.14	0.00	2.199	4.38	0.70	3.5	96.5	0.0	0.44	0.90	0.89	3.49	3.4	0.002	0.63	0.0	0.04	14.12	0.00	2.532	3.19	1.17	3.9	96.1	0.0	0.45	0.29	0.90	0.89	3.59	12001	1459	11	0	22	0	0	logfile
✔	9DPE	47104	2025-06-10	2024-09-21	3.86	4.57	3.79	3.9	0.002	0.45	0.0	0.04	7.39	0.00	2.119	3.63	0.15	1.8	98.2	0.0	1.23	0.86	0.79	2.16	3.9	0.003	0.56	0.0	0.04	11.04	0.00	2.386	5.65	1.51	3.8	96.2	0.0	0.02	0.83	0.87	0.81	2.46	11800	779	5	0	4	0	5786	logfile
✔	9DPC	47102	2025-06-11	2024-09-20	2.65	2.16	2.66	1.9	0.004	0.65	1.0	0.05	16.56	0.00	2.198	8.29	2.95	5.1	94.9	0.0	-1.16	0.82	0.83	3.47	1.9	0.005	0.67	0.0	0.05	16.64	0.00	2.495	7.21	3.23	5.8	94.2	0.0	-1.16	0.21	0.82	0.83	3.64	13370	1777	6	0	0	0	0	logfile
✔	9JM0	61595	2025-06-23	2024-09-20	2.7	3.13	2.96	3.1	0.005	0.66	0.0	0.04	26.16	0.00	1.990	11.89	2.87	3.8	96.2	0.0	0.67	0.72	0.74	2.84	3.1	0.004	0.59	0.0	0.04	25.66	0.00	2.471	8.81	2.97	3.8	96.2	0.0	0.95	1.59	0.74	0.83	2.71	28012	2132	21	512	2	0	0	logfile
✔	9JMD	61598	2025-06-16	2024-09-20	2.74	3.44	2.87	3.3	0.004	0.74	0.0	0.04	16.97	0.02	2.139	7.65	0.82	3.6	96.3	0.1	0.01	0.69	0.78	2.41	3.2	0.004	0.65	0.0	0.04	16.66	0.00	2.161	6.94	1.94	3.3	96.7	0.0	0.99	1.28	0.62	0.79	3.17	18132	1149	6	0	3	2	8989	logfile
✔	9DP9	47099	2025-06-08	2024-09-20	4.1	5.32	4.14	4.1	0.002	0.47	0.0	0.03	24.28	0.00	1.014	17.50	0.00	0.0	0.0	0.0	—	0.92	0.83	—	4.1	0.006	0.76	0.0	0.04	25.84	0.01	1.820	39.73	0.00	0.0	0.0	0.0	—	3.41	0.93	0.89	—	9435	0	2	440	19	0	0	logfile
✔	9GUR	51617	2025-06-23	2024-09-20	4.2	4.93	4.48	4.2	0.003	0.63	0.0	0.05	15.21	0.00	1.737	6.42	2.62	5.9	94.0	0.1	-1.13	0.88	0.83	—	4.2	0.003	0.70	0.0	0.04	15.61	0.00	2.020	12.13	0.00	5.5	94.4	0.1	-0.12	0.71	0.89	0.84	—	27128	3271	10	73	3	0	0	logfile
✔	9DPA	47100	2025-06-14	2024-09-20	3.0	3.66	3.07	3.5	0.007	0.85	0.0	0.05	20.53	0.01	2.196	10.74	1.56	3.6	96.4	0.0	-0.62	0.83	0.83	2.66	3.5	0.003	0.68	0.0	0.04	20.46	0.00	2.479	7.25	2.01	3.7	96.3	0.0	0.05	0.41	0.83	0.84	2.24	9878	1013	7	76	3	0	0	logfile
✔	9DoF	47082	2025-06-26	2024-09-19	4.24	4.79	4.27	4.7	0.005	0.94	0.0	0.05	14.00	0.01	1.990	8.13	0.00	7.8	91.9	0.3	-1.82	0.54	0.68	—	4.7	0.004	0.72	0.0	0.04	13.89	0.01	2.349	9.66	0.00	7.4	92.4	0.2	-1.56	0.53	0.54	0.68	—	30759	1983	6	0	0	0	15408	logfile
✔	9DoW	47094	2025-06-15	2024-09-19	3.1	3.74	3.14	3.6	0.004	0.73	0.0	0.04	20.02	0.01	2.236	10.16	1.56	3.4	96.6	0.0	-0.31	0.77	0.72	2.30	3.6	0.003	0.58	0.0	0.04	19.72	0.00	2.449	8.19	2.56	4.1	95.9	0.0	0.01	1.12	0.81	0.81	2.40	9816	1013	8	73	3	0	0	logfile
✔	9DoU	47091	2025-06-09	2024-09-19	3.2	2.74	3.14	3.1	0.006	1.12	0.0	0.06	21.23	0.01	2.173	1.07	0.24	2.1	97.9	0.0	-0.83	0.63	0.83	3.59	3.1	0.005	0.58	0.0	0.04	21.66	0.00	2.150	4.78	0.86	2.6	97.4	0.0	0.80	0.99	0.64	0.84	2.85	10494	924	6	145	6	0	0	logfile
✔	9Do0	47070	2025-06-19	2024-09-18	2.54	3.28	2.57	3.1	0.002	0.43	0.0	0.03	14.96	0.00	2.125	2.83	0.17	1.5	98.5	0.0	1.87	0.69	0.85	3.34	3.1	0.003	0.49	0.0	0.04	14.79	0.00	2.441	2.20	0.52	1.5	98.5	0.0	2.37	1.78	0.58	0.81	3.42	22148	1394	6	0	8	104	11018	logfile
✔	9DNG	47040	2025-06-05	2024-09-17	3.52	2.45	3.46	2.0	0.003	0.63	0.0	0.04	16.58	0.00	2.221	7.46	0.35	6.1	93.9	0.0	-0.93	0.71	0.71	2.28	2.0	0.004	0.68	0.0	0.05	17.25	0.00	2.504	7.46	3.50	5.4	94.6	0.0	-0.56	0.35	0.71	0.71	1.99	5252	675	3	0	0	0	0	logfile
✔	9DNM	47042	2025-06-05	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.004	0.64	0.0	0.04	16.36	0.01	2.557	5.37	2.99	6.0	94.0	0.0	0.23	0.32	0.74	0.77	2.76	5235	668	4	0	1	0	0	logfile

• ← previous
• Page 21 of 660
• next →