Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iQG	60791	2025-06-08	2024-07-12	2.7	2.91	2.72	2.9	0.004	0.56	0.0	0.04	16.54	0.00	1.913	5.93	1.99	3.0	96.8	0.2	2.07	0.63	0.86	2.74	2.9	0.003	0.55	0.0	0.04	16.93	0.00	1.934	5.44	2.83	3.0	96.8	0.2	1.99	0.87	0.64	0.87	2.34	9137	1191	4	0	5	0	0	logfile
✔	9G2U	50984	2025-06-04	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.97	0.00	2.505	7.13	1.55	0.9	99.1	0.0	6.28	4.28	0.71	0.83	0.52	3634	456	2	0	0	0	0	logfile
✔	9G2R	50981	2025-06-19	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.004	0.66	0.0	0.04	15.76	0.00	2.560	11.30	1.20	0.5	99.5	0.0	4.78	1.54	0.85	0.83	0.22	22620	2824	12	0	0	0	0	logfile
✔	9G2W	50986	2025-06-04	2024-07-11	3.6	4.37	3.61	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.63	0.0	0.03	16.55	0.00	2.500	7.40	1.70	1.1	98.9	0.0	5.76	0.71	0.68	0.83	0.59	3838	478	2	0	0	0	0	logfile
✔	9iPU	60781	2025-06-19	2024-07-11	4.3	7.75	4.30	3.7	0.007	1.11	0.0	0.06	27.55	0.01	1.810	11.23	1.63	3.6	96.4	0.0	1.41	0.87	0.66	—	3.6	0.004	0.63	0.0	0.04	26.94	0.00	2.331	12.64	0.00	3.3	96.7	0.0	1.40	1.74	0.92	0.84	—	15750	1130	15	340	2	0	0	logfile
✔	9CL1	45658	2025-06-18	2024-07-10	2.89	2.99	2.92	3.0	0.006	1.04	3.0	0.07	18.44	0.01	1.899	11.88	6.95	5.2	94.2	0.6	-0.46	0.41	0.54	2.55	3.0	0.003	0.64	0.0	0.05	17.48	0.01	2.029	5.98	1.95	3.2	96.7	0.1	1.09	2.35	0.72	0.84	3.45	20772	2547	24	0	9	156	0	logfile
✔	9iP7	60764	2025-06-05	2024-07-10	3.21	3.65	3.22	3.6	0.008	1.11	0.0	0.07	17.20	0.01	2.225	14.76	3.12	9.9	90.1	0.0	-2.24	0.69	0.74	1.87	3.6	0.003	0.70	0.0	0.05	17.38	0.00	2.546	12.84	4.06	9.7	90.3	0.0	-2.05	0.42	0.71	0.76	2.10	5809	738	5	0	6	0	0	logfile
✔	9iP0	60751	2025-06-27	2024-07-10	4.0	4.24	3.98	4.2	0.003	0.73	0.0	0.04	17.78	0.00	2.121	8.29	0.30	6.0	93.8	0.2	0.06	0.81	0.80	—	4.2	0.004	0.78	0.0	0.04	18.54	0.00	2.396	8.43	4.85	6.8	93.0	0.2	-0.15	0.34	0.81	0.80	—	32053	4018	14	0	14	0	0	logfile
✔	9iPA	60767	2025-06-05	2024-07-10	3.85	4.60	3.90	3.5	0.006	0.83	0.0	0.05	5.94	0.00	2.103	11.99	0.00	9.5	90.3	0.2	-1.69	0.70	0.47	—	3.8	0.006	1.01	0.0	0.05	7.58	0.00	2.420	13.97	0.00	20.6	79.4	0.0	-4.16	3.52	0.82	0.70	—	5610	1143	3	0	0	0	0	logfile
✔	9iP4	60757	2025-06-12	2024-07-10	2.84	3.09	2.97	3.2	0.006	1.08	3.0	0.06	13.10	0.01	2.066	5.88	0.13	4.0	96.0	0.1	-0.16	0.61	0.82	4.02	3.1	0.004	0.62	0.0	0.04	16.30	0.00	2.472	3.53	2.13	3.8	96.2	0.0	0.72	1.01	0.69	0.87	3.56	13615	1702	6	0	1	0	0	logfile
✔	9iP3	60756	2025-06-12	2024-07-10	3.1	3.37	3.22	3.4	0.012	1.22	0.0	0.07	11.48	0.01	2.213	12.97	0.00	4.8	95.2	0.0	-1.14	0.71	0.83	3.59	3.4	0.003	0.63	0.0	0.04	15.16	0.00	2.167	9.00	1.74	3.1	96.9	0.0	1.02	0.50	0.69	0.81	2.89	13464	1693	6	0	1	0	0	logfile
✔	9iP8	60765	2025-06-05	2024-07-10	3.91	4.56	3.92	3.6	0.003	0.64	0.0	0.05	4.55	0.00	2.151	6.55	0.00	8.6	91.4	0.0	-1.44	0.70	0.46	—	3.8	0.003	0.78	0.0	0.05	5.61	0.00	2.443	6.92	0.00	13.5	86.5	0.0	-3.37	2.42	0.82	0.73	—	5610	1143	3	0	0	0	0	logfile
✔	9CL7	45664	2025-06-11	2024-07-10	3.83	4.84	3.88	4.1	0.003	0.70	0.0	0.04	21.87	0.00	2.174	21.56	0.25	5.7	94.2	0.1	-0.85	0.90	0.82	0.87	4.1	0.006	0.77	0.0	0.04	22.19	0.00	1.944	20.75	4.18	6.5	93.4	0.1	-0.89	0.48	0.90	0.83	0.80	12714	1395	6	86	0	0	0	logfile
✔	9iP2	60755	2025-06-12	2024-07-10	2.7	2.85	2.72	2.9	0.012	1.44	3.0	0.08	13.14	0.01	1.708	7.06	0.13	3.9	96.0	0.1	-0.04	0.67	0.87	4.29	2.9	0.002	0.56	0.0	0.04	16.16	0.00	2.574	3.24	2.26	3.3	96.7	0.0	1.20	0.41	0.68	0.87	3.26	13606	1701	6	0	1	0	0	logfile
✔	9CL5	45662	2025-06-19	2024-07-10	2.48	2.84	2.60	2.9	0.004	0.68	0.0	0.05	16.19	0.01	0.056	8.35	2.15	3.0	96.7	0.2	0.74	0.58	0.61	0.33	2.7	0.004	0.83	2.0	0.05	16.48	0.01	2.037	5.68	2.24	3.4	96.5	0.1	1.37	1.07	0.68	0.86	4.31	22272	2688	30	0	6	819	0	logfile
✔	9iP9	60766	2025-06-05	2024-07-10	3.64	4.30	3.65	3.4	0.006	0.90	0.0	0.05	6.47	0.01	2.044	9.52	0.00	10.7	88.8	0.4	-2.18	0.70	0.51	—	3.8	0.012	1.52	0.0	0.06	9.77	0.01	2.160	24.11	0.00	27.6	71.4	1.0	-4.85	1.45	0.81	0.73	—	5610	1143	3	0	0	0	0	logfile
✔	9iPE	60771	2025-06-05	2024-07-10	3.31	4.03	3.35	3.4	0.003	0.64	0.0	0.05	4.43	0.00	2.235	5.79	0.00	9.5	90.5	0.0	-2.01	0.71	0.58	—	3.5	0.003	0.67	0.0	0.05	5.46	0.00	2.498	4.58	0.00	11.5	88.5	0.0	-3.43	1.01	0.81	0.76	—	5753	1172	3	0	0	0	0	logfile
✔	9iPB	60768	2025-06-05	2024-07-10	2.93	3.28	2.95	3.2	0.008	1.07	0.0	0.07	16.45	0.01	1.528	14.87	3.29	7.2	92.8	0.0	-1.97	0.67	0.77	2.00	3.2	0.004	0.71	1.0	0.05	17.42	0.00	2.481	12.85	4.93	7.2	92.8	0.0	-1.51	0.36	0.60	0.75	2.45	6051	769	5	0	6	0	0	logfile
✔	9CL6	45663	2025-06-20	2024-07-10	2.77	2.96	2.87	3.0	0.006	0.92	12.0	0.06	17.95	0.03	1.944	8.08	4.77	5.8	94.0	0.2	-0.75	0.53	0.58	0.65	2.9	0.005	0.74	0.0	0.05	17.16	0.01	2.042	6.55	2.03	4.5	95.2	0.3	0.48	1.67	0.75	0.88	3.47	23928	2850	30	0	6	822	0	logfile
✔	9iPD	60770	2025-06-05	2024-07-10	3.29	4.04	3.30	3.0	0.004	0.66	0.0	0.05	5.08	0.00	2.220	6.51	0.00	8.7	91.2	0.1	-1.38	0.70	0.57	—	3.5	0.006	0.97	0.0	0.05	7.19	0.01	2.324	9.89	0.00	21.4	78.6	0.0	-4.04	2.38	0.82	0.78	—	5753	1172	3	0	0	0	0	logfile

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