Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YJU	39350	2025-07-28	2024-03-02	3.78	3.49	3.67	3.5	0.005	1.03	0.0	0.06	19.79	0.01	2.324	5.53	0.00	5.1	94.9	0.0	-3.41	0.79	0.77	1.99	3.5	0.004	0.70	0.0	0.04	20.76	0.00	2.423	13.18	1.66	4.0	96.0	0.0	-1.01	0.50	0.81	0.78	2.18	9939	1111	8	65	0	0	0	logfile
✔	8YJS	39348	2025-07-28	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.5	0.004	0.65	0.0	0.04	20.62	0.00	2.495	12.47	1.97	4.0	96.0	0.0	-1.25	0.49	0.79	0.81	2.45	9880	1111	8	62	0	0	0	logfile
✔	8YJQ	39346	2025-07-28	2024-03-02	3.51	3.25	3.49	3.6	0.005	0.97	0.0	0.05	19.57	0.01	2.366	5.25	0.00	4.4	95.6	0.0	-3.80	0.79	0.79	2.19	3.6	0.003	0.62	0.0	0.04	20.49	0.00	2.468	11.65	1.44	2.9	97.1	0.0	-1.07	1.00	0.80	0.81	2.44	9856	1115	8	59	0	0	0	logfile
✔	8YJP	39345	2025-07-24	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.66	0.0	0.04	17.60	0.00	2.459	10.25	1.63	3.0	97.0	0.0	2.54	1.02	0.75	0.75	1.61	4946	596	4	0	13	0	0	logfile
✔	8YJL	39344	2025-07-28	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.75	0.00	2.369	13.26	1.96	3.1	96.9	0.0	-1.11	0.95	0.77	0.80	2.67	9853	1115	8	59	0	0	0	logfile
✔	8YJH	39342	2025-07-27	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.66	0.0	0.04	19.72	0.00	2.489	12.70	2.27	3.7	96.3	0.0	-1.16	0.95	0.82	0.81	1.63	9735	1115	8	53	0	0	0	logfile
✔	8S7E	19768	2025-07-25	2024-02-29	3.4	3.72	3.43	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.59	0.0	0.05	18.95	0.00	2.374	12.66	2.96	6.0	94.0	0.0	-1.23	0.46	0.58	0.56	-0.16	7312	466	2	0	0	0	3648	logfile
✔	8S7D	19766	2025-07-24	2024-02-29	3.2	3.46	3.22	3.5	0.003	0.57	0.0	0.04	19.45	0.00	2.090	13.28	4.70	3.5	96.5	0.0	-0.33	0.55	0.71	1.65	3.5	0.003	0.60	0.0	0.04	19.17	0.00	2.219	12.18	4.21	3.8	96.2	0.0	-0.16	0.33	0.58	0.71	1.78	5488	691	4	0	0	0	0	logfile
✔	8Yi7	39311	2025-07-24	2024-02-29	3.57	3.79	3.53	3.8	0.013	1.64	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.8	0.003	0.64	0.0	0.04	14.86	0.00	2.491	6.16	2.23	2.6	97.4	0.0	0.47	1.19	0.71	0.84	1.97	5586	697	6	0	4	0	0	logfile
✔	9AUF	43878	2025-07-25	2024-02-29	2.73	2.96	2.73	3.0	0.005	0.73	0.0	0.05	21.70	0.01	2.331	3.00	0.57	2.9	97.1	0.0	-0.18	0.72	0.88	5.39	3.0	0.004	0.57	0.0	0.04	21.92	0.00	2.361	6.08	3.69	2.6	97.4	0.0	1.23	0.87	0.72	0.88	4.93	7251	389	5	192	0	0	0	logfile
✔	8YHU	39301	2025-07-24	2024-02-28	2.88	2.30	2.91	2.1	0.004	0.74	0.0	0.05	15.50	0.00	2.248	11.29	0.30	13.0	86.8	0.1	-3.42	0.69	0.66	2.73	2.1	0.005	0.78	0.0	0.05	15.55	0.00	2.437	9.87	2.55	12.5	87.5	0.0	-3.42	0.35	0.71	0.69	1.88	5990	719	8	0	15	0	0	logfile
✔	9AUC	43877	2025-07-28	2024-02-28	2.4	2.09	2.33	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.002	0.57	0.0	0.04	16.30	0.00	2.484	4.47	1.10	1.9	98.1	0.0	1.15	0.91	0.64	0.82	3.46	10369	1275	11	0	10	16	0	logfile
✔	8YHo	39290	2025-07-24	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.85	0.0	0.04	15.06	0.00	2.552	11.74	1.97	7.1	92.9	0.0	-0.42	1.34	0.76	0.79	2.28	6206	759	3	0	0	0	0	logfile
✔	8YH2	39279	2025-07-26	2024-02-27	3.27	4.08	—	3.8	0.004	0.64	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.84	0.0	0.05	16.17	0.00	2.514	15.79	3.36	4.6	95.3	0.1	-0.16	1.56	0.65	0.71	0.83	8690	1103	6	0	1	0	0	logfile
✔	8YH0	39278	2025-07-26	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.4	0.004	0.89	0.0	0.05	16.00	0.00	2.447	11.46	2.10	4.0	96.0	0.0	0.01	1.58	0.70	0.78	1.58	8693	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2025-07-26	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.87	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.83	0.0	0.05	16.38	0.00	2.405	15.50	2.10	4.8	95.2	0.0	-0.16	1.87	0.67	0.74	0.96	8691	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-07-26	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.52	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.83	0.0	0.05	16.40	0.00	2.411	14.22	3.15	5.5	94.4	0.1	-0.11	1.16	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YGT	39263	2025-07-23	2024-02-27	3.01	2.18	2.96	2.1	0.007	1.00	0.0	0.06	9.09	0.01	2.374	1.88	0.00	5.9	94.1	0.0	-3.14	0.56	0.80	3.94	2.0	0.004	0.67	0.0	0.04	13.49	0.00	2.602	3.47	3.33	7.3	92.7	0.0	-1.13	0.56	0.58	0.82	3.67	3518	449	4	0	0	0	0	logfile
✔	8YGU	39264	2025-07-23	2024-02-27	3.13	2.22	3.06	2.0	0.006	0.92	0.0	0.06	8.81	0.01	2.179	1.51	0.00	5.9	94.1	0.0	-3.27	0.58	0.78	4.48	2.1	0.003	0.61	0.0	0.04	13.46	0.00	2.409	3.03	3.42	5.7	94.3	0.0	-0.97	1.25	0.60	0.81	3.97	3693	474	5	0	0	0	0	logfile
✔	8YGS	39261	2025-07-27	2024-02-26	3.47	2.24	3.47	2.2	0.011	1.50	5.0	0.11	11.76	0.01	2.320	2.13	0.00	5.9	94.0	0.1	-3.41	0.46	0.66	3.05	2.1	0.006	0.77	0.0	0.05	15.12	0.00	2.480	5.64	3.79	5.3	94.7	0.0	-1.60	1.26	0.57	0.79	3.26	9291	1187	7	0	0	0	0	logfile

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