Table showing results for August 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A8M	15233	2022-08-03	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	17.75	0.00	2.218	29.38	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.4	0.017	1.68	0.0	0.05	18.28	0.01	1.856	55.99	0.35	9.1	90.8	0.2	-2.53	0.62	0.83	0.74	—	5244	647	4	0	6	0	0	logfile
✔	7Y7i	33666	2022-08-04	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.78	0.00	2.234	9.04	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.3	0.003	0.60	0.0	0.04	28.97	0.00	2.230	8.91	0.00	2.2	97.8	0.0	2.42	0.68	0.69	0.80	1.93	12445	824	12	286	0	0	0	logfile
✔	7Y45	33601	2022-08-06	2022-06-14	3.3	3.31	3.23	3.3	0.011	1.45	0.0	0.07	19.08	0.01	2.265	13.47	11.22	10.0	89.3	0.7	-3.83	0.71	0.77	1.68	3.3	0.008	0.98	0.0	0.04	17.13	0.01	2.154	10.19	0.13	3.2	96.8	0.0	-0.37	0.70	0.73	0.82	2.10	22638	2654	22	0	78	6	0	logfile
✔	7Y42	33600	2022-08-06	2022-06-13	3.45	3.86	3.62	3.8	0.006	0.83	0.0	0.05	14.45	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.002	0.57	0.0	0.04	15.81	0.00	2.180	8.26	0.08	4.8	95.2	0.0	-1.83	0.43	0.78	0.82	1.84	23058	2904	6	0	30	0	0	logfile
✔	8D1L	27134	2022-08-05	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.22	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.70	0.00	2.260	5.47	0.94	1.6	98.4	0.0	1.82	1.70	0.62	0.86	4.36	16306	1880	10	0	46	0	0	logfile
✔	8D1K	27133	2022-08-05	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.74	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.005	0.59	0.0	0.04	17.07	0.01	2.242	5.44	1.59	0.9	99.1	0.0	1.26	0.91	0.67	0.89	3.99	16305	1880	10	0	45	0	0	logfile
✔	8D1G	27129	2022-08-05	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.002	0.48	0.0	0.04	16.91	0.00	2.240	6.67	0.59	1.2	98.8	0.0	2.03	0.90	0.71	0.86	5.46	16201	1735	15	0	61	620	0	logfile
✔	8D1M	27135	2022-08-05	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.003	0.49	0.0	0.04	16.59	0.00	2.204	7.77	0.24	1.7	98.3	0.0	1.48	0.92	0.62	0.87	2.35	15590	1880	5	0	0	0	0	logfile
✔	8D0B	27104	2022-08-07	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.50	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.003	0.51	0.0	0.04	15.95	0.00	2.167	6.18	0.06	3.8	96.1	0.0	1.28	0.21	0.87	0.83	1.73	29367	3630	8	15	0	0	0	logfile
✔	8D0K	27107	2022-08-07	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.60	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.55	0.0	0.04	14.88	0.00	2.170	11.15	0.00	4.9	95.0	0.1	0.61	0.28	0.82	0.80	—	31011	3820	8	20	0	0	0	logfile
✔	7ZYi	15024	2022-08-03	2022-05-24	2.88	2.74	2.96	2.8	0.013	0.75	0.0	0.09	15.70	0.00	2.152	8.60	0.69	2.8	97.2	0.0	1.17	0.49	0.82	2.41	2.8	0.003	0.57	0.0	0.04	16.55	0.00	2.124	6.73	2.88	2.6	97.4	0.0	0.84	1.02	0.49	0.82	2.45	6641	852	5	0	6	1	0	logfile
✔	8CYB	27073	2022-08-03	2022-05-23	2.7	3.56	2.88	3.2	0.002	0.44	1.0	0.04	13.75	0.00	1.966	7.39	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.004	0.51	1.0	0.04	14.56	0.00	1.947	9.09	0.67	5.7	93.9	0.3	-0.46	0.38	0.80	0.78	2.11	54126	3432	29	0	114	0	25897	logfile
✔	8CYA	27072	2022-08-04	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.86	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.005	0.51	0.0	0.04	13.03	0.00	1.976	10.85	0.53	5.5	94.4	0.2	-0.02	0.39	0.84	0.77	2.10	57833	3681	29	0	88	0	27935	logfile
✔	7ZXY	15017	2022-08-05	2022-05-23	3.15	2.97	3.04	3.0	0.006	0.94	0.0	0.05	15.11	0.01	2.106	10.77	0.00	3.5	96.5	0.0	-0.44	0.74	0.81	3.20	3.0	0.003	0.69	0.0	0.04	15.41	0.00	2.181	9.56	0.13	3.3	96.7	0.0	0.33	0.31	0.75	0.83	2.82	15606	1913	25	0	23	0	0	logfile
✔	8CYC	27074	2022-08-07	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.26	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.3	0.004	0.68	0.0	0.05	15.62	0.00	2.120	14.01	2.27	7.0	92.8	0.2	-0.67	0.50	0.76	0.76	1.84	28697	3677	6	0	0	0	0	logfile
✔	8CYD	27075	2022-08-07	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.56	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	3.0	0.007	0.65	0.0	0.05	14.34	0.00	2.060	8.77	1.52	5.2	94.6	0.2	-0.16	1.16	0.80	0.83	2.47	28454	3663	6	0	0	0	0	logfile
✔	8CY9	27071	2022-08-07	2022-05-23	2.9	3.60	3.07	3.3	0.002	0.51	0.0	0.04	13.25	0.00	2.199	6.64	0.19	3.8	96.1	0.1	0.62	0.78	0.81	1.75	3.3	0.003	0.57	0.0	0.04	14.78	0.00	2.120	9.15	1.04	4.3	95.7	0.1	0.23	1.58	0.77	0.81	2.16	28469	3663	6	0	0	0	0	logfile
✔	8CYJ	27080	2022-08-04	2022-05-23	3.6	4.32	3.59	3.6	0.003	0.62	0.0	0.04	14.18	0.01	2.056	7.59	0.00	6.7	92.5	0.9	-0.91	0.79	0.57	1.23	3.8	0.004	0.71	0.0	0.04	15.93	0.01	1.964	18.27	0.35	10.6	88.7	0.7	-1.55	0.79	0.81	0.63	1.16	10575	701	5	0	0	0	5089	logfile
✔	8CY6	27068	2022-08-03	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.24	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.003	0.49	0.0	0.04	11.62	0.00	2.036	6.83	0.13	3.8	96.1	0.0	0.03	0.37	0.83	0.79	1.95	56077	3666	6	0	0	0	27658	logfile
✔	8CY7	27069	2022-08-03	2022-05-23	2.9	3.84	3.06	3.3	0.002	0.71	10.0	0.17	12.19	0.00	2.018	5.31	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	3.3	0.004	0.77	10.0	0.17	13.17	0.00	1.971	8.03	0.79	5.1	94.8	0.1	0.37	1.21	0.83	0.77	2.41	54932	3513	21	0	74	0	26549	logfile

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