Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AYB	43984	2024-09-23	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.43	0.00	2.603	3.57	1.42	1.4	98.6	0.0	1.80	0.33	0.43	0.79	1.91	3347	428	1	0	0	0	0	logfile
✔	9AYC	43985	2024-09-30	2024-03-07	3.23	3.84	3.34	3.7	0.004	0.61	0.0	0.04	11.28	0.00	2.353	0.34	0.00	1.3	98.7	0.0	1.11	0.65	0.84	2.92	3.7	0.003	0.50	0.0	0.04	13.90	0.00	2.430	3.54	0.93	1.8	98.2	0.0	2.82	0.82	0.66	0.85	2.28	23723	1481	1	0	0	0	11947	logfile
✔	9EM8	19813	2024-09-25	2024-03-07	4.1	4.53	4.13	4.3	0.002	0.38	0.0	0.03	9.41	0.00	1.973	6.95	0.44	1.8	98.2	0.0	1.61	0.80	0.62	—	4.3	0.002	0.48	0.0	0.03	12.38	0.00	2.165	44.49	0.00	3.4	96.6	0.0	1.90	3.24	0.86	0.75	—	57040	6336	8	0	0	0	6168	logfile
✔	9EM7	19812	2024-09-25	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.87	0.00	2.354	35.00	1.25	1.9	98.1	0.0	2.71	0.92	0.90	0.83	0.60	57048	6336	8	0	0	0	6176	logfile
✔	9EM9	19814	2024-09-24	2024-03-07	3.76	4.06	3.82	4.0	0.004	0.75	0.0	0.04	14.92	0.01	1.853	3.14	0.00	5.1	94.9	0.0	-0.71	0.80	0.71	2.12	3.9	0.004	0.77	0.0	0.04	15.61	0.00	1.811	9.23	1.58	2.9	97.1	0.0	0.41	1.47	0.84	0.77	2.03	8182	1024	4	0	4	0	0	logfile
✔	8YLT	39390	2024-09-27	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.003	0.47	0.0	0.04	16.04	0.00	2.143	3.14	0.77	3.0	97.0	0.0	1.37	0.50	0.77	0.76	2.02	65834	3978	8	0	4	0	32508	logfile
✔	9AXF	43966	2024-09-29	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.004	0.57	0.0	0.04	14.16	0.00	2.272	3.94	1.56	3.1	96.9	0.0	0.85	0.33	0.81	0.80	3.67	21342	2607	15	0	40	0	0	logfile
✔	9AXE	43965	2024-09-27	2024-03-06	3.1	3.85	3.22	3.5	0.007	0.72	0.0	0.06	13.29	0.00	1.561	6.46	0.00	2.7	97.3	0.0	-0.63	0.77	0.79	1.92	3.5	0.003	0.55	0.0	0.04	15.28	0.00	2.510	8.43	0.88	2.6	97.4	0.0	0.77	1.79	0.77	0.85	2.46	65632	8106	14	0	0	0	0	logfile
✔	8YKX	39375	2024-09-24	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.56	0.0	0.04	15.66	0.00	2.591	4.92	1.18	1.9	98.1	0.0	1.52	0.85	0.60	0.84	4.07	8710	1121	6	0	1	0	0	logfile
✔	8S86	19798	2024-09-23	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.003	0.70	0.0	0.05	15.79	0.00	2.439	14.91	2.84	3.4	96.6	0.0	-0.25	1.20	0.59	0.64	2.28	6177	785	2	0	0	0	0	logfile
✔	8YKF	39369	2024-09-28	2024-03-05	3.35	3.53	3.41	3.4	0.005	0.78	0.0	0.05	16.25	0.00	2.095	5.00	1.27	2.8	97.1	0.0	-0.06	0.72	0.67	1.83	3.4	0.003	0.54	0.0	0.04	16.69	0.00	2.263	5.09	1.50	3.6	96.4	0.0	0.65	0.72	0.78	0.80	1.64	69382	4208	6	0	0	0	34366	logfile
✔	8YKW	39374	2024-09-24	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.89	0.00	2.513	4.75	1.51	2.3	97.7	0.0	1.75	0.43	0.63	0.86	3.24	8718	1124	6	0	1	0	0	logfile
✔	8YL5	39382	2024-09-28	2024-03-05	3.45	3.60	3.48	3.5	0.004	0.63	0.0	0.04	16.54	0.00	2.183	4.76	0.41	2.9	97.1	0.0	0.58	0.79	0.79	1.87	3.5	0.005	0.55	0.0	0.04	16.95	0.00	2.273	4.87	1.63	4.1	95.9	0.0	0.41	0.39	0.79	0.80	1.92	69382	4208	6	0	0	0	34366	logfile
✔	8YJY	39353	2024-09-23	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	17.79	0.00	2.482	7.83	2.64	3.8	96.2	0.0	1.64	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	8Yi7	39311	2024-09-23	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.60	0.0	0.04	14.96	0.00	2.476	5.53	1.75	2.6	97.4	0.0	0.30	1.48	0.71	0.84	1.91	5586	697	6	0	4	0	0	logfile
✔	8YHD	39287	2024-09-29	2024-02-28	2.93	3.18	3.06	3.2	0.008	1.26	0.0	0.07	18.37	0.01	2.251	9.28	2.02	4.1	95.9	0.0	-2.64	0.69	0.80	2.34	3.2	0.005	0.69	0.0	0.05	19.29	0.00	2.320	10.14	2.92	3.5	96.5	0.0	0.04	0.73	0.68	0.82	2.52	23859	2838	25	88	11	0	0	logfile
✔	8YHE	39288	2024-09-29	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.003	0.75	1.0	0.04	18.65	0.00	2.153	10.07	4.34	3.4	96.6	0.0	0.05	1.06	0.68	0.80	2.61	21183	2561	22	76	9	0	0	logfile
✔	9AUC	43877	2024-09-25	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.003	0.58	0.0	0.04	16.38	0.00	2.464	5.10	1.37	2.2	97.8	0.0	0.88	0.66	0.64	0.83	3.48	10369	1275	11	0	10	16	0	logfile
✔	8YH9	39285	2024-09-29	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.003	0.64	0.0	0.04	20.58	0.00	2.460	11.37	6.61	8.4	91.6	0.0	-2.24	0.93	0.67	0.72	1.03	21153	2450	10	60	0	0	0	logfile
✔	9ATW	43835	2024-09-29	2024-02-27	3.5	3.26	3.56	4.2	0.012	2.18	0.0	0.13	15.03	0.01	2.675	7.20	0.00	5.3	94.7	0.0	-3.62	0.74	0.74	3.46	4.2	0.003	0.68	0.0	0.06	15.13	0.00	2.420	25.83	7.81	5.0	95.0	0.0	-3.39	1.49	0.73	0.77	1.83	21952	1344	64	0	0	0	11840	logfile

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