Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YG6	39237	2024-09-25	2024-02-26	2.77	3.81	2.97	3.3	0.003	0.66	0.0	0.05	16.65	0.02	2.027	6.90	0.24	6.9	93.1	0.0	-0.49	0.91	0.86	2.65	3.3	0.005	0.70	0.0	0.04	14.14	0.00	2.589	5.47	1.03	8.7	91.3	0.0	-0.80	1.08	0.92	0.89	3.12	11442	1395	9	0	18	0	0	logfile
✔	8YGH	39250	2024-09-26	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.004	0.64	0.0	0.04	16.42	0.00	2.403	7.64	1.21	4.5	95.5	0.0	0.39	0.30	0.90	0.88	2.28	12244	1510	2	0	0	0	0	logfile
✔	8YGG	39249	2024-09-26	2024-02-26	2.98	3.85	3.05	3.4	0.003	0.65	1.0	0.04	15.45	0.00	2.233	9.55	2.07	2.7	97.2	0.1	0.81	0.90	0.88	2.30	3.4	0.004	0.63	0.0	0.04	15.89	0.00	2.478	7.48	2.15	3.4	96.6	0.0	1.04	0.33	0.90	0.89	2.18	12096	1490	2	0	0	0	0	logfile
✔	9ASP	43822	2024-09-26	2024-02-26	3.2	4.18	3.26	3.3	0.004	0.62	0.0	0.04	19.27	0.00	2.196	10.51	0.09	5.1	94.9	0.0	0.10	0.77	0.67	1.49	3.2	0.003	0.56	0.0	0.04	19.45	0.00	2.492	6.84	2.15	4.7	95.3	0.0	0.43	1.21	0.83	0.84	1.51	12227	1256	6	96	4	1	0	logfile
✔	8YG8	39238	2024-09-25	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8YGE	39245	2024-09-26	2024-02-26	2.76	3.69	2.79	3.2	0.006	0.59	0.0	0.04	17.86	0.00	1.476	6.74	1.62	4.7	95.2	0.1	0.62	0.90	0.89	2.27	3.2	0.003	0.60	0.0	0.04	18.13	0.00	2.040	6.25	1.32	3.9	96.0	0.1	0.97	0.87	0.90	0.89	2.11	13479	1558	8	40	5	0	0	logfile
✔	9ASN	43820	2024-09-26	2024-02-26	3.2	4.03	3.21	3.2	0.005	0.61	0.0	0.04	17.26	0.00	2.197	6.23	0.00	3.6	96.4	0.0	1.14	0.77	0.69	2.28	3.2	0.004	0.54	0.0	0.04	17.41	0.00	2.262	4.26	0.66	3.4	96.6	0.0	1.54	0.31	0.83	0.86	2.01	11697	1184	6	97	4	2	0	logfile
✔	9ASL	43818	2024-09-29	2024-02-26	3.5	3.93	3.52	3.9	0.003	0.66	0.0	0.04	18.71	0.01	2.155	16.35	0.48	5.1	94.9	0.0	-1.52	0.76	0.75	1.34	3.8	0.003	0.67	0.0	0.04	18.48	0.00	2.507	11.72	3.83	4.6	95.4	0.0	-0.49	1.19	0.75	0.77	0.97	23128	2964	4	0	0	0	0	logfile
✔	9ASJ	43816	2024-09-26	2024-02-26	3.5	3.98	3.57	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.67	0.0	0.04	18.91	0.00	2.460	10.56	2.72	5.1	94.7	0.1	-0.14	1.07	0.69	0.70	1.16	11626	1482	4	0	2	0	0	logfile
✔	9ASK	43817	2024-09-25	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	18.97	0.00	2.595	12.02	5.27	4.5	95.4	0.1	-0.64	1.06	0.70	0.70	0.85	11564	1482	2	0	0	0	0	logfile
✔	9ASQ	43823	2024-09-26	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	9ASH	43814	2024-09-29	2024-02-25	2.58	2.83	2.69	2.9	0.005	0.64	0.0	0.04	16.63	0.00	1.963	10.97	0.00	6.8	93.1	0.1	-0.64	0.70	0.76	2.77	2.9	0.004	0.60	0.0	0.04	18.47	0.00	1.923	9.21	1.95	6.4	93.6	0.0	-0.32	0.35	0.71	0.82	2.21	22309	2624	14	61	5	2	0	logfile
✔	8S5i	19736	2024-09-23	2024-02-23	3.1	3.24	3.20	3.3	0.004	0.58	0.0	0.04	13.53	0.00	2.087	3.04	0.58	1.9	97.8	0.2	0.50	0.57	0.65	2.82	3.2	0.004	0.59	0.0	0.04	15.41	0.00	2.363	5.49	1.83	2.9	97.0	0.1	0.77	0.75	0.65	0.79	2.80	47880	3042	12	0	6	0	23952	logfile
✔	8S5H	19735	2024-09-27	2024-02-23	3.7	4.00	3.77	3.8	0.004	0.66	0.0	0.04	14.76	0.01	2.035	6.20	0.00	1.6	98.2	0.2	0.92	0.74	0.74	0.97	3.8	0.004	0.61	0.0	0.04	15.53	0.00	2.373	6.51	1.20	4.0	96.0	0.0	0.52	1.27	0.76	0.79	0.94	63840	4056	16	0	8	0	31936	logfile
✔	8S5K	19738	2024-09-27	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.004	0.59	0.0	0.04	15.39	0.00	2.277	7.02	1.29	4.3	95.6	0.0	0.31	1.02	0.76	0.72	1.39	63840	4056	16	0	8	0	31936	logfile
✔	9ARH	43782	2024-09-29	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.70	0.0	0.04	14.49	0.00	2.444	7.29	4.54	8.0	92.0	0.1	-0.90	1.62	0.69	0.73	1.10	22792	3182	10	0	6	0	0	logfile
✔	9ARi	43783	2024-09-29	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.004	0.70	0.0	0.04	12.76	0.00	2.439	7.07	5.87	8.4	91.6	0.0	-1.04	1.23	0.70	0.72	1.23	20756	3178	6	0	0	0	0	logfile
✔	8YF0	39206	2024-09-25	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	9ARG	43781	2024-09-29	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.028	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.67	0.0	0.04	10.00	0.00	2.550	6.54	0.00	5.9	94.1	0.0	-0.69	1.12	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	8YF1	39207	2024-09-25	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile

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