Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B0K	44045	2024-09-30	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.970	6.70	0.54	3.8	96.2	0.0	1.24	0.43	0.84	0.84	1.65	23896	3020	14	0	12	0	0	logfile
✔	9ENB	19830	2024-09-24	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENE	19832	2024-09-24	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.60	0.0	0.06	22.19	0.00	2.263	3.26	2.25	4.4	95.6	0.0	-0.72	0.26	0.89	0.87	2.14	8484	658	4	146	0	0	0	logfile
✔	9ENC	19831	2024-09-23	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	9ENF	19833	2024-09-24	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.004	0.97	1.0	0.04	24.30	0.00	1.680	12.65	1.93	6.1	93.9	0.0	-2.06	0.97	0.79	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9EMC	19817	2024-09-27	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.004	0.77	1.0	0.04	17.63	0.00	1.938	6.26	1.62	2.6	97.4	0.0	1.41	1.14	0.82	0.90	1.95	15489	1977	12	0	12	0	0	logfile
✔	9AZQ	44019	2024-09-29	2024-03-11	3.82	5.23	—	4.3	0.005	0.88	1.0	0.05	15.04	0.01	2.075	2.67	0.00	3.2	96.8	0.0	-2.89	0.87	0.85	0.44	4.3	0.005	0.82	0.0	0.04	15.02	0.00	1.805	16.54	0.51	4.7	95.3	0.0	0.38	1.26	0.87	0.87	0.65	23563	2980	16	0	14	0	0	logfile
✔	9AZ4	44012	2024-09-30	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.003	0.62	0.0	0.04	14.49	0.00	1.960	7.00	0.35	3.1	96.9	0.0	1.34	0.37	0.89	0.85	1.41	23865	3015	14	0	12	0	0	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	9AYY	44002	2024-09-30	2024-03-08	3.1	3.36	3.19	3.4	0.005	0.73	0.0	0.05	14.35	0.01	2.284	3.67	0.00	4.1	95.9	0.0	-1.28	0.65	0.78	2.46	3.4	0.003	0.53	0.0	0.04	14.99	0.00	2.379	4.69	1.14	3.9	96.1	0.0	0.02	0.32	0.67	0.80	2.34	24813	3123	6	0	30	0	0	logfile
✔	9AYW	44000	2024-09-30	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.55	0.0	0.04	15.84	0.00	2.507	4.03	1.77	2.8	97.2	0.0	0.47	1.57	0.69	0.84	2.98	24813	3123	6	0	30	0	0	logfile
✔	9EME	19818	2024-09-23	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.90	0.00	2.560	3.61	1.35	6.2	93.8	0.0	-3.04	1.18	0.49	0.82	5.35	4140	552	6	0	0	0	0	logfile
✔	9EMA	19815	2024-09-27	2024-03-07	2.4	2.98	2.39	2.8	0.008	1.07	0.0	0.06	18.26	0.01	1.999	1.44	0.42	1.3	98.6	0.1	-0.24	0.80	0.76	1.87	2.7	0.002	0.51	0.0	0.04	18.07	0.00	1.965	3.99	0.48	2.0	98.0	0.0	1.70	1.41	0.86	0.92	4.03	15562	1974	12	0	13	0	0	logfile
✔	9AYB	43984	2024-09-23	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.43	0.00	2.603	3.57	1.42	1.4	98.6	0.0	1.80	0.33	0.43	0.79	1.91	3347	428	1	0	0	0	0	logfile
✔	9AYF	43990	2024-09-28	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	2.0	0.003	0.54	0.0	0.04	15.26	0.00	2.304	4.33	2.95	2.7	97.3	0.0	0.70	0.97	0.79	0.78	3.00	19630	2441	14	0	27	0	0	logfile
✔	9EM7	19812	2024-09-25	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.87	0.00	2.354	35.00	1.25	1.9	98.1	0.0	2.71	0.92	0.90	0.83	0.60	57048	6336	8	0	0	0	6176	logfile
✔	9EM9	19814	2024-09-24	2024-03-07	3.76	4.06	3.82	4.0	0.004	0.75	0.0	0.04	14.92	0.01	1.853	3.14	0.00	5.1	94.9	0.0	-0.71	0.80	0.71	2.12	3.9	0.004	0.77	0.0	0.04	15.61	0.00	1.811	9.23	1.58	2.9	97.1	0.0	0.41	1.47	0.84	0.77	2.03	8182	1024	4	0	4	0	0	logfile
✔	9AYC	43985	2024-09-30	2024-03-07	3.23	3.84	3.34	3.7	0.004	0.61	0.0	0.04	11.28	0.00	2.353	0.34	0.00	1.3	98.7	0.0	1.11	0.65	0.84	2.92	3.7	0.003	0.50	0.0	0.04	13.90	0.00	2.430	3.54	0.93	1.8	98.2	0.0	2.82	0.82	0.66	0.85	2.28	23723	1481	1	0	0	0	11947	logfile
✔	9EM8	19813	2024-09-25	2024-03-07	4.1	4.53	4.13	4.3	0.002	0.38	0.0	0.03	9.41	0.00	1.973	6.95	0.44	1.8	98.2	0.0	1.61	0.80	0.62	—	4.3	0.002	0.48	0.0	0.03	12.38	0.00	2.165	44.49	0.00	3.4	96.6	0.0	1.90	3.24	0.86	0.75	—	57040	6336	8	0	0	0	6168	logfile
✔	9AXC	43932	2024-09-24	2024-03-06	4.16	3.88	4.03	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.69	0.0	0.05	13.94	0.00	2.360	9.78	0.00	4.0	95.8	0.2	0.33	0.65	0.73	0.79	—	8677	1079	6	0	2	0	0	logfile

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