Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EE8	47951	2025-09-18	2024-11-18	2.63	3.33	2.91	3.2	0.005	0.61	1.0	0.04	16.08	0.00	2.221	4.17	0.26	2.7	97.3	0.0	1.26	0.73	0.87	3.21	3.2	0.004	0.53	0.0	0.04	16.22	0.00	2.401	3.29	1.72	2.8	97.2	0.0	1.43	0.55	0.69	0.86	3.13	14831	1025	6	0	1	0	7180	logfile
✔	9EEA	47953	2025-09-18	2024-11-18	3.36	4.21	3.71	4.2	0.003	0.59	0.0	0.04	17.73	0.00	2.020	11.52	0.40	6.8	93.2	0.0	-0.74	0.69	0.63	0.54	4.2	0.003	0.70	0.0	0.04	16.68	0.00	2.278	12.95	4.17	6.0	94.0	0.0	-0.47	0.96	0.72	0.73	0.10	14648	1011	6	0	1	0	7098	logfile
✔	9ED9	47941	2025-09-18	2024-11-16	2.95	3.41	3.02	3.3	0.004	0.86	0.0	0.05	19.24	0.01	2.258	4.10	0.52	3.3	96.7	0.0	-0.89	0.83	0.89	2.91	3.2	0.003	0.57	0.0	0.04	19.17	0.00	2.473	6.67	1.55	3.2	96.8	0.0	1.07	0.95	0.80	0.88	2.84	13785	1337	5	143	0	0	0	logfile
✔	9KMK	62436	2025-09-17	2024-11-16	3.06	3.31	3.07	3.3	0.007	0.94	0.0	0.06	13.80	0.01	2.256	6.17	0.00	5.1	94.9	0.0	-1.99	0.63	0.83	3.28	3.3	0.004	0.66	0.0	0.04	15.55	0.00	2.444	7.28	2.22	4.1	95.9	0.0	0.19	1.21	0.64	0.86	2.79	5872	746	4	0	1	0	0	logfile
✔	9EDA	47942	2025-09-17	2024-11-16	2.88	3.41	2.92	3.2	0.006	0.98	0.0	0.06	19.26	0.01	2.193	7.52	0.41	3.2	96.8	0.0	-1.21	0.74	0.78	2.68	3.3	0.004	0.62	0.0	0.04	19.87	0.00	2.472	7.61	2.97	2.8	97.2	0.0	0.47	1.47	0.79	0.85	3.34	12079	1150	6	138	0	1	0	logfile
✔	9EDB	47943	2025-09-18	2024-11-16	3.1	3.60	3.19	3.5	0.005	0.90	0.0	0.05	19.80	0.01	2.248	4.84	0.53	4.1	95.9	0.0	-2.05	0.80	0.86	1.89	3.5	0.003	0.57	0.0	0.04	19.79	0.00	2.507	7.23	1.93	2.7	97.3	0.0	0.45	0.96	0.80	0.87	2.22	12636	1342	4	122	0	0	0	logfile
✔	9KMM	62438	2025-09-17	2024-11-16	3.3	3.62	3.28	3.6	0.006	0.93	0.0	0.05	13.93	0.01	2.221	7.55	0.00	6.4	93.6	0.0	-2.31	0.62	0.79	2.87	3.6	0.004	0.63	0.0	0.04	15.58	0.01	2.264	10.52	1.88	6.6	93.4	0.0	-0.71	0.34	0.63	0.83	2.39	5931	753	4	0	4	0	0	logfile
✔	9KML	62437	2025-09-17	2024-11-16	3.11	3.35	3.13	3.4	0.006	0.88	0.0	0.05	13.75	0.01	2.235	7.11	0.16	4.9	95.1	0.0	-1.86	0.61	0.82	3.20	3.4	0.003	0.59	0.0	0.04	15.39	0.00	2.563	9.76	2.37	4.3	95.7	0.0	0.27	0.92	0.59	0.84	2.62	5872	746	4	0	1	0	0	logfile
✔	9KMi	62434	2025-09-17	2024-11-16	3.05	3.34	3.04	3.3	0.009	1.01	0.0	0.06	14.30	0.01	2.256	7.01	0.15	6.0	94.0	0.0	-2.32	0.60	0.84	3.56	3.3	0.004	0.63	0.0	0.04	15.28	0.00	2.172	9.01	2.62	5.3	94.7	0.0	-0.13	0.33	0.60	0.86	2.90	6026	764	4	0	4	1	0	logfile
✔	9ED1	47930	2025-09-18	2024-11-15	3.5	3.78	3.45	3.7	0.002	0.49	0.0	0.04	13.06	0.00	2.271	2.96	0.00	2.6	97.4	0.0	-1.17	0.67	0.81	1.84	3.7	0.002	0.53	0.0	0.04	15.48	0.00	2.277	1.82	1.90	3.3	96.7	0.0	-0.26	0.37	0.68	0.82	1.30	15449	2020	14	0	17	0	0	logfile
✔	9KLo	62411	2025-09-18	2024-11-15	2.81	3.37	2.99	3.3	0.006	0.67	0.0	0.05	19.58	0.00	2.122	3.64	0.19	3.7	96.3	0.0	1.11	0.74	0.83	3.37	3.2	0.004	0.55	0.0	0.04	20.11	0.00	2.200	2.82	0.83	3.3	96.7	0.0	1.93	1.71	0.73	0.83	2.89	14372	1396	8	168	4	4	0	logfile
✔	9HEJ	52078	2025-09-18	2024-11-14	2.82	2.29	2.81	2.0	0.004	0.75	0.0	0.05	15.79	0.01	2.207	7.41	1.92	5.3	94.7	0.0	-1.01	0.77	0.78	2.96	2.0	0.005	0.71	0.0	0.05	16.81	0.00	2.173	7.14	3.54	5.2	94.8	0.0	-0.60	0.38	0.77	0.78	2.62	15177	1963	13	0	21	0	0	logfile
✔	9KLN	62410	2025-09-18	2024-11-14	2.55	3.08	2.69	3.0	0.007	0.88	0.0	0.08	21.24	0.02	2.042	7.78	2.00	4.1	95.9	0.1	0.73	0.74	0.86	2.68	3.0	0.003	0.55	0.0	0.04	20.66	0.00	1.919	4.14	3.05	3.0	97.0	0.0	1.62	1.30	0.73	0.85	2.95	13749	1385	5	145	2	8	0	logfile
✔	9KLP	62412	2025-09-18	2024-11-14	2.87	3.52	3.12	3.4	0.007	0.64	0.0	0.05	18.92	0.01	1.830	4.09	0.00	4.4	95.5	0.1	0.59	0.77	0.86	2.72	3.4	0.002	0.52	0.0	0.03	19.72	0.00	1.697	3.33	0.92	3.5	96.5	0.0	1.29	0.34	0.74	0.83	1.90	12569	1268	6	129	6	0	0	logfile
✔	9HEL	52080	2025-09-17	2024-11-14	3.1	2.44	3.09	2.2	0.003	0.68	0.0	0.05	17.02	0.02	2.117	8.04	0.35	5.0	95.0	0.0	-1.30	0.74	0.78	2.39	2.2	0.004	0.70	0.0	0.05	16.70	0.00	2.225	7.02	4.61	5.0	94.9	0.1	-1.04	0.89	0.75	0.79	2.08	10616	1382	7	0	18	0	0	logfile
✔	9HEK	52079	2025-09-19	2024-11-14	3.15	2.36	3.11	2.1	0.004	0.77	0.0	0.05	15.99	0.00	2.101	7.52	0.56	3.9	96.1	0.0	-0.85	0.77	0.78	2.10	2.1	0.004	0.68	0.0	0.05	16.83	0.00	2.223	7.03	3.22	4.4	95.6	0.0	-0.63	1.08	0.76	0.78	2.10	22064	2856	17	0	40	0	0	logfile
✔	9KLQ	62413	2025-09-18	2024-11-14	3.11	3.67	3.25	3.5	0.006	0.70	0.0	0.05	19.05	0.01	1.956	7.43	0.00	5.2	94.6	0.2	0.18	0.76	0.82	2.30	3.5	0.003	0.55	0.0	0.03	19.82	0.00	1.938	5.14	1.22	4.5	95.4	0.1	0.99	0.36	0.77	0.83	2.19	13055	1284	5	148	2	0	0	logfile
✔	9HE1	52074	2025-09-19	2024-11-13	3.0	3.47	3.06	3.4	0.002	0.43	0.0	0.04	8.80	0.00	1.521	3.83	0.39	2.7	97.3	0.0	0.63	0.63	0.75	2.65	3.4	0.003	0.53	0.0	0.04	12.07	0.00	2.336	3.57	0.79	4.3	95.7	0.0	-0.08	0.56	0.64	0.77	2.32	23241	1511	6	0	0	0	11404	logfile
✔	9KJU	62377	2025-09-17	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.72	0.0	0.04	14.92	0.00	2.494	5.98	2.04	7.2	92.7	0.1	1.01	0.70	0.68	0.88	1.57	7398	936	8	0	8	1	0	logfile
✔	9HDQ	52072	2025-09-17	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.55	0.0	0.04	20.10	0.00	2.606	3.39	1.17	1.7	98.3	0.0	2.12	3.97	0.68	0.82	3.16	10261	1025	8	85	1	0	0	logfile

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