Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9E9F	47796	2025-09-19	2024-11-08	3.63	4.13	3.91	3.9	0.003	0.58	0.0	0.04	11.62	0.00	2.196	15.45	2.83	3.5	96.4	0.0	0.89	0.70	0.74	1.19	3.9	0.004	0.76	0.0	0.04	15.32	0.00	2.468	15.92	2.70	3.9	96.0	0.0	0.83	0.90	0.72	0.82	1.16	23048	3035	3	0	0	0	0	logfile
✔	9KGK	62321	2025-09-17	2024-11-08	2.63	3.53	2.71	3.4	0.003	0.61	0.0	0.04	12.01	0.00	2.142	7.96	0.00	5.4	94.6	0.0	0.06	0.71	0.81	2.70	3.4	0.004	0.74	0.0	0.05	14.54	0.00	2.278	8.42	1.31	6.4	93.6	0.0	-0.20	1.13	0.65	0.79	2.69	7556	973	3	0	0	0	0	logfile
✔	9KG2	62306	2025-09-17	2024-11-07	4.1	4.34	4.18	4.3	0.003	0.61	0.0	0.04	14.83	0.00	2.211	10.37	0.00	6.2	93.7	0.1	0.32	0.64	0.79	—	4.3	0.003	0.64	0.0	0.04	14.98	0.00	2.424	8.76	0.00	6.9	93.0	0.1	0.35	0.39	0.64	0.79	—	8964	1166	1	0	0	0	0	logfile
✔	9KG1	62305	2025-09-18	2024-11-07	2.9	2.93	2.92	3.3	0.004	0.77	0.0	0.05	13.84	0.00	1.845	26.01	3.31	15.9	83.9	0.1	-4.58	0.45	0.40	0.54	3.3	0.004	0.81	0.0	0.05	17.14	0.00	2.299	16.89	4.22	9.5	90.4	0.1	-3.42	1.18	0.51	0.48	0.77	13853	1694	7	0	0	0	0	logfile
✔	9KG6	62310	2025-09-18	2024-11-07	2.8	2.85	2.99	3.1	0.004	0.55	0.0	0.04	12.04	0.00	2.129	16.96	2.48	2.1	97.9	0.0	-0.59	0.35	0.50	3.90	3.0	0.004	0.58	0.0	0.05	16.45	0.00	2.423	14.73	3.36	3.2	96.8	0.0	0.44	1.62	0.67	0.82	4.06	20422	2051	7	0	0	0	4007	logfile
✔	9HBB	52014	2025-09-17	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.005	1.21	0.0	0.05	15.55	0.00	2.415	2.41	3.03	3.2	96.8	0.0	-1.47	1.40	0.43	0.85	4.97	7074	456	6	0	0	0	3606	logfile
✔	9E8Z	47737	2025-09-19	2024-11-06	3.47	2.48	3.51	2.2	0.005	0.66	0.0	0.04	17.64	0.00	2.159	10.22	0.00	9.8	90.0	0.2	-0.67	0.69	0.67	1.20	2.1	0.005	0.80	0.0	0.04	19.23	0.00	2.385	10.64	2.49	9.0	90.9	0.1	-0.21	0.58	0.72	0.72	1.15	24631	2873	13	117	4	0	0	logfile
✔	9E90	47738	2025-09-17	2024-11-06	3.45	2.43	3.48	2.2	0.007	0.75	0.0	0.05	13.39	0.00	2.076	8.96	0.00	11.7	88.1	0.2	-1.68	0.71	0.68	2.06	2.2	0.005	1.02	1.0	0.04	16.67	0.01	2.246	11.00	3.19	11.2	88.6	0.2	-1.25	0.73	0.75	0.74	1.72	9672	1222	5	0	3	0	0	logfile
✔	9E91	47739	2025-09-17	2024-11-06	3.31	2.33	3.27	2.1	0.008	0.89	0.0	0.05	14.86	0.01	2.243	10.73	1.47	12.0	88.0	0.0	-2.13	0.71	0.69	2.19	2.1	0.003	0.64	0.0	0.04	16.49	0.00	2.522	9.52	1.61	10.7	89.3	0.0	-1.29	0.54	0.72	0.70	1.84	6238	782	4	0	2	0	0	logfile
✔	9HB3	52012	2025-09-17	2024-11-05	2.5	2.13	—	2.0	0.004	0.65	0.0	0.04	10.96	0.00	2.545	8.44	0.95	2.9	97.1	0.0	0.93	0.62	0.50	1.68	1.6	0.005	0.77	0.0	0.04	15.55	0.01	2.433	13.16	4.20	5.1	94.9	0.0	-0.11	1.31	0.70	0.65	1.21	7139	951	5	0	0	0	0	logfile
✔	9KEN	62292	2025-09-17	2024-11-05	3.63	3.87	3.56	3.8	0.009	0.99	0.0	0.06	9.45	0.01	2.231	6.91	0.00	6.5	93.5	0.0	-5.03	0.73	0.75	1.80	3.7	0.003	0.73	0.0	0.04	15.02	0.00	2.504	9.62	1.51	3.2	96.8	0.0	-0.55	0.90	0.72	0.74	1.27	10083	1274	3	0	0	0	0	logfile
✔	9E82	47700	2025-09-17	2024-11-04	3.4	3.55	3.27	3.5	0.003	0.53	1.0	0.04	9.81	0.00	2.068	10.34	3.04	7.2	92.8	0.0	-0.53	0.57	0.63	1.07	3.5	0.005	0.81	0.0	0.05	13.72	0.01	2.425	15.45	4.78	6.4	93.6	0.0	-0.65	1.36	0.58	0.64	1.10	8200	1034	6	0	1	0	0	logfile
✔	9E7T	47689	2025-09-17	2024-11-04	2.8	3.03	2.75	3.1	0.003	0.46	0.0	0.04	18.85	0.00	1.967	3.72	1.29	2.5	97.5	0.0	-1.37	0.68	0.86	3.91	3.1	0.003	0.53	0.0	0.04	18.76	0.00	1.943	3.61	1.66	2.2	97.8	0.0	0.79	0.25	0.68	0.86	3.43	4842	597	6	0	1	2	0	logfile
✔	9E7U	47690	2025-09-17	2024-11-04	3.5	2.34	3.41	2.1	0.005	0.65	0.0	0.04	18.98	0.00	1.963	6.48	4.93	5.9	94.1	0.0	-0.77	0.77	0.76	2.34	2.1	0.004	0.63	0.0	0.04	19.50	0.00	1.981	6.68	4.74	5.6	94.4	0.0	-0.54	0.26	0.77	0.75	2.00	4867	601	5	0	1	2	0	logfile
✔	9KDF	62274	2025-09-17	2024-11-03	3.3	2.46	—	2.9	0.007	0.74	0.0	0.04	14.53	0.01	1.213	10.13	0.25	4.1	95.9	0.0	0.94	0.68	0.63	1.43	2.9	0.003	0.64	0.0	0.04	17.10	0.00	1.274	10.13	2.74	3.9	96.1	0.0	1.51	0.52	0.70	0.66	0.89	7399	917	5	0	7	0	0	logfile
✔	9KDG	62275	2025-09-17	2024-11-03	3.33	3.31	3.36	3.5	0.007	0.68	0.0	0.04	14.75	0.01	2.035	5.75	0.00	3.2	96.8	0.0	0.37	0.46	0.71	2.78	3.5	0.003	0.58	0.0	0.04	16.87	0.00	1.959	5.54	1.77	3.3	96.7	0.0	1.47	0.48	0.50	0.75	1.84	7292	907	4	0	7	0	0	logfile
✔	9KCA	62247	2025-09-18	2024-11-01	3.18	3.39	3.18	3.4	0.005	0.65	0.0	0.04	17.73	0.00	2.238	4.01	0.24	4.8	95.2	0.0	-0.89	0.68	0.89	2.17	3.4	0.004	0.57	0.0	0.04	17.85	0.00	2.492	2.37	2.26	5.5	94.5	0.0	-0.02	0.22	0.69	0.90	1.89	15005	1825	10	0	15	0	0	logfile
✔	9KCH	62251	2025-09-18	2024-11-01	4.19	4.56	4.27	4.4	0.004	0.79	0.0	0.04	14.03	0.01	2.210	7.25	0.11	4.5	95.3	0.2	0.28	0.67	0.73	—	4.4	0.003	0.56	0.0	0.04	14.35	0.00	2.181	10.23	0.00	4.8	95.2	0.0	1.22	0.97	0.67	0.74	—	18473	1161	8	0	0	0	9352	logfile
✔	9KC9	62246	2025-09-18	2024-11-01	3.1	3.32	2.95	3.4	0.003	0.59	0.0	0.04	18.10	0.00	2.239	4.25	0.61	3.7	96.3	0.0	0.26	0.64	0.86	1.81	3.4	0.003	0.50	0.0	0.04	18.10	0.00	2.482	2.88	2.57	4.7	95.3	0.0	0.52	0.90	0.64	0.87	1.95	15005	1825	10	0	15	0	0	logfile
✔	9E7J	47678	2025-09-17	2024-11-01	2.98	3.23	2.97	3.3	0.011	0.90	0.0	0.05	14.35	0.00	2.493	11.05	0.00	2.8	97.2	0.0	-0.61	0.60	0.76	3.17	3.3	0.004	0.67	0.0	0.04	16.10	0.00	2.663	10.07	1.27	0.0	100.0	0.0	2.82	0.77	0.58	0.77	3.23	3112	440	4	0	0	0	0	logfile

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