Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K6Q	62132	2025-09-17	2024-10-22	2.7	2.65	2.52	2.7	0.004	0.83	0.0	0.07	20.25	0.01	2.228	6.93	0.81	4.0	95.9	0.1	-0.54	0.71	0.80	2.96	2.7	0.004	0.70	0.0	0.05	20.24	0.01	2.505	10.44	3.75	3.7	96.3	0.0	-0.08	0.47	0.71	0.81	2.82	6276	706	4	31	1	0	0	logfile
✔	9E26	47439	2025-09-18	2024-10-21	2.8	3.57	—	3.3	0.005	0.53	0.0	0.05	14.68	0.00	1.886	5.77	1.07	2.9	97.1	0.0	1.74	0.83	0.69	0.71	3.3	0.006	1.04	2.0	0.05	16.46	0.01	1.997	13.78	2.93	2.7	97.3	0.0	1.15	1.22	0.91	0.87	2.48	18444	2532	10	0	8	0	0	logfile
✔	9E22	47429	2025-09-19	2024-10-21	3.3	3.86	3.47	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.085	5.09	0.00	3.1	96.9	0.0	0.16	0.75	0.76	1.16	3.7	0.007	0.73	0.0	0.05	16.70	0.00	1.908	12.10	1.44	3.7	96.3	0.0	0.62	0.35	0.76	0.78	1.15	24612	3245	3	0	5	0	0	logfile
✔	9E24	47433	2025-09-18	2024-10-21	3.4	4.22	—	3.9	0.003	0.50	0.0	0.04	13.40	0.00	2.008	6.55	0.06	2.6	97.4	0.0	1.00	0.88	0.74	-0.32	3.8	0.003	0.76	0.0	0.05	15.62	0.00	2.463	11.87	3.55	3.1	96.9	0.0	0.62	1.39	0.92	0.85	1.55	18324	2532	6	0	0	0	0	logfile
✔	9K49	62050	2025-09-18	2024-10-21	3.6	3.97	3.72	3.9	0.004	0.71	0.0	0.04	18.22	0.00	2.212	5.03	1.90	4.8	95.2	0.0	2.11	0.63	0.76	0.47	3.9	0.004	0.57	0.0	0.03	18.44	0.00	2.297	6.55	3.49	5.3	94.7	0.0	2.53	0.38	0.62	0.77	0.56	18473	1161	8	0	0	0	9352	logfile
✔	9K3Z	62034	2025-09-17	2024-10-21	2.75	3.65	2.90	3.1	0.004	0.59	0.0	0.04	29.15	0.00	2.204	5.41	0.64	1.1	98.9	0.0	2.69	0.90	0.86	2.83	3.1	0.004	0.61	0.0	0.03	28.85	0.00	2.108	7.20	1.61	1.6	98.4	0.0	3.74	0.51	0.90	0.88	2.49	11814	744	10	290	0	0	0	logfile
✔	9K43	62042	2025-09-17	2024-10-21	2.87	4.01	3.12	3.2	0.004	0.61	0.0	0.04	28.51	0.00	2.234	7.24	0.80	0.8	99.2	0.0	2.81	0.90	0.85	2.69	3.2	0.004	0.64	0.0	0.03	28.55	0.00	2.480	8.05	2.57	2.2	97.8	0.0	2.95	1.63	0.92	0.89	2.02	11814	744	10	290	0	0	0	logfile
✔	9E29	47446	2025-09-18	2024-10-21	3.3	4.22	—	3.9	0.004	0.59	0.0	0.05	15.01	0.00	1.765	10.24	0.17	5.0	95.0	0.0	0.33	0.86	0.68	0.72	3.8	0.006	0.96	1.0	0.05	16.60	0.01	1.900	17.16	3.49	4.1	95.8	0.0	0.08	1.84	0.92	0.84	0.73	18498	2532	12	0	12	0	0	logfile
✔	9K40	62036	2025-09-17	2024-10-21	3.15	3.98	3.19	3.3	0.004	0.61	0.0	0.04	28.83	0.00	2.219	7.01	0.65	1.0	99.0	0.0	2.72	0.88	0.81	2.25	3.3	0.004	0.63	0.0	0.03	29.13	0.00	2.482	9.46	1.78	2.3	97.7	0.0	3.34	0.67	0.92	0.88	1.66	11824	746	10	290	0	0	0	logfile
✔	9K41	62038	2025-09-17	2024-10-21	2.81	3.92	3.03	3.1	0.004	0.56	0.0	0.04	28.88	0.00	2.209	6.01	1.29	1.6	98.4	0.0	1.93	0.91	0.88	2.33	3.1	0.004	0.62	0.0	0.03	28.69	0.00	2.276	7.79	1.29	2.7	97.3	0.0	3.45	1.20	0.91	0.89	1.99	11828	746	10	290	0	0	0	logfile
✔	9E1T	47420	2025-09-17	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.003	0.62	0.0	0.04	16.01	0.00	2.093	8.85	1.48	3.9	96.1	0.0	0.08	2.75	0.74	0.80	2.98	10032	1204	4	2	2	0	0	logfile
✔	9E25	47436	2025-09-18	2024-10-21	3.2	3.94	—	3.7	0.003	0.46	0.0	0.04	13.78	0.00	1.991	5.22	0.06	4.1	95.9	0.0	1.28	0.84	0.70	-0.08	3.7	0.004	0.72	0.0	0.05	16.00	0.00	2.423	11.08	2.59	2.7	97.3	0.0	1.07	1.25	0.91	0.87	1.22	18180	2532	6	0	0	0	0	logfile
✔	9K42	62040	2025-09-17	2024-10-21	3.14	3.95	3.18	3.2	0.006	0.84	0.0	0.06	31.95	0.00	2.050	5.44	0.49	1.2	98.8	0.0	2.37	0.86	0.78	2.08	3.2	0.003	0.62	0.0	0.03	29.19	0.00	2.517	10.13	1.13	1.9	98.1	0.0	3.32	2.29	0.92	0.87	2.03	11824	746	10	290	0	0	0	logfile
✔	9E21	47426	2025-09-17	2024-10-21	3.1	2.19	3.03	2.0	0.002	0.49	0.0	0.04	12.99	0.00	2.470	4.17	0.28	3.3	96.7	0.0	-1.10	0.65	0.81	4.00	2.0	0.003	0.51	0.0	0.04	14.18	0.00	2.629	4.48	1.40	2.4	97.6	0.0	-0.73	0.29	0.64	0.82	3.45	3285	424	4	0	1	0	0	logfile
✔	9E28	47443	2025-09-18	2024-10-21	4.4	4.83	4.46	4.2	0.002	0.48	0.0	0.04	4.24	0.00	2.269	4.24	0.00	7.5	92.4	0.1	0.58	0.79	0.73	—	4.2	0.002	0.46	0.0	0.04	3.63	0.00	2.558	2.10	0.00	5.5	94.5	0.1	1.61	1.00	0.79	0.73	—	21249	4734	16	0	0	0	0	logfile
✔	9E27	47442	2025-09-18	2024-10-21	3.2	3.80	—	3.6	0.003	0.53	0.0	0.05	14.22	0.00	1.923	8.47	0.11	4.2	95.8	0.0	1.35	0.89	0.83	2.46	3.6	0.003	0.66	0.0	0.04	15.66	0.00	2.059	7.61	2.09	2.7	97.3	0.0	1.04	0.52	0.91	0.86	1.96	18496	2532	12	0	12	0	0	logfile
✔	9E0Y	47377	2025-09-19	2024-10-20	3.4	4.07	3.57	3.7	0.004	0.76	0.0	0.05	16.02	0.01	2.502	7.49	0.04	4.8	95.2	0.0	-0.98	0.77	0.63	0.52	3.7	0.003	0.69	0.0	0.04	17.27	0.00	2.482	14.62	1.52	5.0	95.0	0.0	0.02	0.38	0.78	0.64	0.27	22201	2753	2	0	4	0	0	logfile
✔	9E0W	47372	2025-09-19	2024-10-20	3.2	3.73	3.34	3.6	0.003	0.61	0.0	0.04	15.03	0.00	1.962	6.19	0.04	3.7	96.3	0.0	0.62	0.75	0.81	1.99	3.6	0.003	0.58	0.0	0.04	16.35	0.00	1.883	6.99	2.04	3.4	96.6	0.0	1.44	1.37	0.73	0.80	1.80	24531	3095	3	0	6	0	0	logfile
✔	9K3K	62017	2025-09-17	2024-10-19	3.12	3.71	2.85	3.4	0.004	0.74	0.0	0.04	13.29	0.01	2.179	8.21	0.00	4.4	95.6	0.0	-0.23	0.77	0.84	3.98	3.4	0.005	0.73	0.0	0.04	15.35	0.00	2.437	7.80	2.07	3.2	96.8	0.0	0.89	1.28	0.73	0.85	2.58	9755	1256	6	0	0	0	0	logfile
✔	9E0U	47371	2025-09-19	2024-10-19	3.4	3.95	3.57	3.8	0.004	0.67	0.0	0.04	14.96	0.00	1.953	5.65	0.00	3.5	96.5	0.0	0.66	0.77	0.82	1.59	3.8	0.003	0.61	0.0	0.04	16.29	0.00	1.916	6.93	1.22	2.5	97.5	0.0	1.81	0.41	0.78	0.83	1.27	22051	2783	2	0	6	0	0	logfile

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