Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K0F	61946	2025-09-17	2024-10-15	2.8	2.94	2.17	3.0	0.008	0.72	0.0	0.06	13.31	0.00	2.437	8.20	0.00	7.2	92.8	0.0	-2.77	0.44	0.89	6.47	3.0	0.003	0.57	0.0	0.06	16.06	0.00	2.589	3.98	1.88	3.4	96.6	0.0	-0.80	0.39	0.45	0.91	5.52	2115	288	17	0	0	6	0	logfile
✔	9DZ6	47325	2025-09-18	2024-10-15	3.1	3.74	3.18	3.5	0.004	0.49	0.0	0.04	11.85	0.01	1.821	4.99	0.26	2.3	97.6	0.1	2.01	0.82	0.82	3.19	3.5	0.002	0.46	0.0	0.04	13.52	0.00	1.780	3.36	0.71	1.4	98.5	0.1	2.88	0.42	0.82	0.83	2.70	20204	1226	3	0	2	0	10125	logfile
✔	9DZ2	47323	2025-09-17	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.65	0.0	0.04	15.41	0.00	2.507	5.29	2.04	5.6	93.8	0.6	-1.32	0.74	0.76	0.79	2.84	9523	1207	8	0	0	0	0	logfile
✔	9K0D	61944	2025-09-17	2024-10-15	2.6	2.52	2.26	2.8	0.008	0.85	0.0	0.06	16.07	0.00	2.369	8.13	0.00	5.1	94.9	0.0	-3.14	0.43	0.87	5.59	21.0	0.006	0.70	0.0	0.06	18.69	0.00	2.607	2.94	2.43	5.1	94.9	0.0	-1.95	0.50	0.41	0.89	2.97	2874	390	24	0	0	6	0	logfile
✔	9K0E	61945	2025-09-17	2024-10-15	2.8	2.98	2.37	3.0	0.006	0.64	0.0	0.06	16.58	0.00	2.209	10.28	0.00	13.5	86.5	0.0	-3.39	0.46	0.86	4.69	3.0	0.003	0.54	0.0	0.05	18.88	0.00	2.525	5.80	1.01	8.1	91.9	0.0	-0.67	0.97	0.43	0.87	3.57	1890	246	16	0	0	6	0	logfile
✔	9DYH	47304	2025-09-18	2024-10-14	3.15	3.50	3.22	3.5	0.012	1.37	0.0	0.07	15.27	0.01	1.993	8.17	1.64	1.8	98.2	0.0	1.20	0.55	0.79	3.21	3.5	0.003	0.65	0.0	0.04	16.57	0.00	2.314	11.13	1.32	3.2	96.8	0.0	1.30	1.78	0.57	0.79	2.40	14340	1735	10	0	5	0	0	logfile
✔	9DYM	47309	2025-09-18	2024-10-14	2.67	3.00	2.77	3.1	0.013	1.31	0.0	0.08	15.93	0.01	2.088	6.53	2.12	1.5	98.5	0.0	1.40	0.68	0.92	4.06	3.1	0.004	0.53	0.0	0.04	16.68	0.00	2.249	5.11	1.95	1.6	98.4	0.0	1.44	0.28	0.61	0.88	3.61	15629	1880	12	0	10	2	0	logfile
✔	9DYK	47307	2025-09-18	2024-10-14	2.27	2.50	2.38	2.6	0.002	0.53	0.0	0.04	14.11	0.00	2.240	5.29	0.06	0.9	99.1	0.0	1.18	0.68	0.88	5.19	2.6	0.002	0.48	0.0	0.04	14.72	0.00	2.346	5.29	1.04	1.1	98.9	0.0	1.49	0.20	0.64	0.88	4.98	15486	1880	10	0	6	0	0	logfile
✔	9DYo	47311	2025-09-18	2024-10-14	2.57	2.82	2.58	2.9	0.003	0.45	0.0	0.03	15.83	0.00	1.984	16.91	0.86	1.2	98.8	0.0	1.52	0.65	0.88	4.00	2.9	0.003	0.48	0.0	0.04	16.44	0.00	2.340	6.61	1.10	1.9	98.1	0.0	1.45	0.25	0.62	0.87	3.45	15451	1880	10	0	6	0	0	logfile
✔	9DXS	47297	2025-09-18	2024-10-11	3.55	4.09	3.67	4.0	0.011	1.52	0.0	0.19	20.28	0.01	2.217	4.35	0.39	11.0	88.4	0.6	-5.80	0.60	0.82	3.26	4.0	0.006	1.03	0.0	0.07	18.31	0.01	2.258	11.11	4.26	11.3	88.6	0.1	-0.79	3.16	0.63	0.85	1.97	15294	1784	14	0	43	0	0	logfile
✔	9DXM	47291	2025-09-18	2024-10-11	3.2	3.82	3.26	3.6	0.006	0.60	0.0	0.04	11.97	0.00	1.965	3.86	0.00	2.4	97.6	0.0	1.29	0.85	0.87	3.31	3.6	0.003	0.51	0.0	0.04	13.55	0.00	1.884	4.06	0.00	2.0	98.0	0.0	2.46	0.46	0.84	0.85	2.48	20203	1224	3	0	2	0	10147	logfile
✔	9DXA	47283	2025-09-18	2024-10-11	3.4	3.75	3.47	3.7	0.009	0.80	0.0	0.04	15.02	0.00	2.281	4.71	0.23	2.4	97.6	0.0	1.98	0.63	0.79	1.86	3.7	0.003	0.54	0.0	0.04	15.30	0.00	2.493	8.20	3.25	2.9	97.1	0.0	2.24	1.29	0.62	0.80	1.26	16291	1880	12	0	18	0	0	logfile
✔	9H1S	51771	2025-09-17	2024-10-10	3.0	3.84	2.13	3.4	0.023	1.64	0.0	0.07	9.90	0.01	2.272	5.47	0.00	3.8	96.2	0.0	-1.11	0.49	0.82	2.90	3.4	0.004	0.80	0.0	0.05	14.55	0.00	2.426	10.65	0.90	4.2	95.8	0.0	-0.48	1.72	0.50	0.83	2.32	4994	616	4	0	2	0	0	logfile
✔	9H1Z	51786	2025-09-17	2024-10-10	3.3	3.72	3.44	3.7	0.015	0.99	2.0	0.05	13.83	0.01	1.599	4.31	0.91	3.1	96.9	0.0	-1.10	0.54	0.66	3.18	3.7	0.003	0.61	0.0	0.04	15.17	0.00	2.225	3.53	0.99	3.2	96.8	0.0	1.16	2.18	0.67	0.80	2.37	10892	1340	3	0	1	0	0	logfile
✔	9JWG	61852	2025-09-17	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.004	0.77	0.0	0.05	17.43	0.01	2.397	11.49	3.29	8.8	91.1	0.1	-0.61	0.50	0.69	0.79	1.16	11647	1456	2	0	0	0	0	logfile
✔	9DWZ	47275	2025-09-17	2024-10-10	2.35	2.30	2.56	1.5	0.041	3.05	0.0	0.12	18.59	0.02	2.168	15.80	0.00	0.0	100.0	0.0	2.31	0.96	0.94	5.61	1.6	0.008	0.62	0.0	0.03	16.81	0.00	2.522	7.40	0.79	0.5	99.5	0.0	4.26	0.36	0.95	0.93	4.56	8766	801	36	0	54	0	0	logfile
✔	9DX7	47282	2025-09-18	2024-10-10	3.3	3.69	3.40	3.7	0.010	0.79	0.0	0.04	12.83	0.00	2.254	4.54	0.17	2.0	98.0	0.0	1.85	0.63	0.81	2.53	3.7	0.003	0.55	0.0	0.04	15.29	0.00	2.435	8.28	2.98	2.6	97.4	0.0	2.29	1.63	0.60	0.79	1.93	16238	1873	12	0	18	0	0	logfile
✔	9DWJ	47252	2025-09-18	2024-10-09	3.4	3.54	3.52	3.5	0.005	0.70	0.0	0.04	28.02	0.01	2.285	5.75	0.64	3.0	97.0	0.0	0.84	0.82	0.86	3.13	3.5	0.004	0.57	0.0	0.03	28.25	0.00	2.466	8.41	2.09	3.4	96.6	0.0	2.72	0.33	0.82	0.88	2.27	11887	748	11	291	0	0	0	logfile
✔	9JVV	61844	2025-09-17	2024-10-09	2.82	3.24	2.83	3.2	0.003	0.67	0.0	0.04	12.39	0.00	2.265	8.46	0.10	3.4	96.6	0.0	-0.66	0.60	0.80	2.20	3.2	0.002	0.54	0.0	0.04	14.66	0.00	2.583	5.69	2.16	3.0	97.0	0.0	2.18	0.44	0.58	0.81	1.12	9405	1245	6	0	3	0	0	logfile
✔	9DWN	47258	2025-09-17	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.49	0.0	0.03	14.65	0.00	2.526	6.17	1.57	2.3	97.7	0.0	4.08	0.25	0.54	0.83	3.90	4325	540	6	0	9	2	0	logfile

• ← previous
• Page 32 of 600
• next →