Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DW9	47239	2025-09-17	2024-10-08	2.8	3.05	2.88	3.1	0.004	0.67	1.0	0.04	15.32	0.00	1.931	2.37	1.69	2.2	97.8	0.0	0.50	0.68	0.87	3.80	3.1	0.003	0.53	0.0	0.04	16.50	0.00	1.991	2.29	2.07	2.6	97.4	0.0	1.19	0.67	0.68	0.87	3.14	12332	1511	5	0	19	3	0	logfile
✔	9DVK	47209	2025-09-18	2024-10-08	3.06	3.17	2.87	3.4	0.004	0.68	0.0	0.04	17.97	0.00	2.258	5.34	0.74	1.1	98.9	0.0	3.52	0.52	0.76	2.02	3.4	0.003	0.49	0.0	0.04	16.36	0.00	2.408	6.10	2.38	2.0	98.0	0.0	2.85	1.05	0.48	0.78	1.68	12839	760	4	0	6	0	6319	logfile
✔	9DVR	47216	2025-09-18	2024-10-08	2.7	2.19	2.70	2.0	0.004	0.60	0.0	0.05	10.96	0.00	2.024	4.58	0.89	4.7	95.3	0.0	-0.53	0.80	0.79	4.34	1.9	0.004	0.61	0.0	0.05	14.82	0.00	2.551	5.66	2.26	5.1	94.9	0.0	-0.61	0.34	0.81	0.79	3.82	13692	1682	6	0	8	0	0	logfile
✔	9JUN	61831	2025-09-17	2024-10-08	3.4	3.25	3.71	3.4	0.003	0.57	0.0	0.04	14.49	0.00	2.212	11.17	0.00	5.8	94.2	0.0	1.31	0.56	0.74	1.09	3.3	0.003	0.62	0.0	0.04	16.73	0.00	2.530	10.67	1.69	5.4	94.6	0.0	1.25	0.76	0.62	0.81	1.88	8971	1165	1	0	0	0	0	logfile
✔	9DVN	47212	2025-09-18	2024-10-08	2.75	2.89	2.70	2.9	0.006	1.05	0.0	0.05	19.74	0.00	2.215	4.57	0.99	2.2	97.8	0.0	3.70	0.61	0.79	2.58	2.9	0.003	0.52	0.0	0.03	17.59	0.00	2.344	4.06	1.78	2.8	97.2	0.0	3.21	0.65	0.61	0.84	3.34	19422	1145	6	0	14	2	9521	logfile
✔	9JUL	61829	2025-09-17	2024-10-08	3.1	3.11	3.25	3.2	0.005	0.76	0.0	0.05	14.49	0.01	2.238	12.44	0.74	5.3	94.7	0.0	0.64	0.65	0.81	2.08	3.2	0.004	0.60	0.0	0.04	16.28	0.00	2.450	9.25	2.21	5.4	94.6	0.0	1.36	0.47	0.67	0.83	1.79	9005	1165	2	0	1	0	0	logfile
✔	9JUK	61828	2025-09-17	2024-10-08	3.3	2.84	3.64	3.3	0.004	0.64	0.0	0.04	16.73	0.01	2.036	14.03	0.11	4.9	95.1	0.0	0.83	0.54	0.70	1.78	3.3	0.002	0.59	0.0	0.04	17.18	0.00	2.017	11.11	1.79	5.3	94.7	0.0	1.15	0.40	0.54	0.72	1.79	9035	1165	2	0	4	0	0	logfile
✔	9JUM	61830	2025-09-17	2024-10-08	3.1	3.55	3.61	3.4	0.005	0.76	0.0	0.05	15.66	0.01	1.922	15.83	0.00	4.1	95.9	0.0	0.83	0.70	0.83	1.75	3.4	0.004	0.67	0.0	0.04	16.22	0.00	1.927	13.36	2.32	5.2	94.8	0.0	1.70	0.49	0.71	0.86	1.54	9069	1165	2	0	5	0	0	logfile
✔	9JUo	61832	2025-09-17	2024-10-08	3.1	2.82	3.07	3.2	0.005	0.70	0.0	0.05	16.18	0.00	2.047	13.24	0.43	5.3	94.7	0.0	0.76	0.65	0.81	1.94	3.2	0.003	0.60	0.0	0.04	16.66	0.00	1.956	9.03	2.47	5.1	94.9	0.0	1.18	0.43	0.67	0.84	1.90	8858	1144	2	0	4	0	0	logfile
✔	9JUJ	61827	2025-09-17	2024-10-08	3.4	3.22	3.39	3.5	0.005	0.76	0.0	0.05	14.45	0.00	2.215	14.54	0.21	4.7	95.3	0.0	0.13	0.52	0.66	0.35	3.4	0.004	0.68	0.0	0.04	17.23	0.00	2.420	13.66	2.11	5.7	94.3	0.0	0.24	1.62	0.57	0.75	1.30	8971	1165	1	0	0	0	0	logfile
✔	9DVo	47213	2025-09-18	2024-10-08	3.1	3.16	2.93	3.2	0.006	1.06	0.0	0.05	20.32	0.00	2.208	5.71	0.79	1.9	98.1	0.0	3.39	0.61	0.81	2.73	3.2	0.003	0.54	0.0	0.04	18.31	0.00	2.395	5.56	2.16	2.7	97.3	0.0	2.91	1.18	0.62	0.85	2.72	19515	1152	6	0	12	2	9572	logfile
✔	9JTU	61817	2025-09-18	2024-10-07	3.43	4.12	3.54	3.9	0.003	0.58	0.0	0.04	19.41	0.00	2.200	10.44	0.12	4.5	95.5	0.0	-0.01	0.83	0.79	2.02	3.9	0.004	0.66	0.0	0.04	20.55	0.00	2.276	10.16	1.48	4.8	95.2	0.0	0.19	1.24	0.83	0.82	1.81	18706	1928	12	164	4	0	0	logfile
✔	9JTS	61816	2025-09-18	2024-10-07	3.36	4.12	3.41	3.9	0.003	0.58	0.0	0.04	19.47	0.00	2.221	10.32	0.18	4.1	95.9	0.0	-0.40	0.83	0.78	1.95	3.9	0.004	0.64	0.0	0.04	20.46	0.00	2.321	9.37	1.78	4.2	95.8	0.0	0.19	1.25	0.84	0.82	1.99	18706	1928	12	164	4	0	0	logfile
✔	9DVA	47194	2025-09-18	2024-10-07	3.1	3.30	3.09	3.3	0.003	0.51	0.0	0.04	14.23	0.00	2.077	4.00	0.00	1.2	98.8	0.0	0.25	0.62	0.81	3.20	3.3	0.003	0.57	0.0	0.04	15.78	0.00	2.193	4.11	1.50	1.9	98.1	0.0	0.92	1.09	0.70	0.86	2.44	18529	2354	13	0	10	0	0	logfile
✔	9JUB	61826	2025-09-17	2024-10-07	3.1	3.29	3.10	3.3	0.022	1.26	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.003	0.68	0.0	0.05	13.90	0.00	2.555	7.56	1.67	6.1	93.9	0.0	-1.06	0.60	0.62	0.74	2.82	6479	829	5	0	5	0	0	logfile
✔	9DVF	47202	2025-09-19	2024-10-07	3.38	3.55	3.38	3.5	0.004	0.64	0.0	0.04	15.04	0.01	2.333	2.66	0.46	0.7	99.3	0.0	-1.25	0.68	0.80	1.42	3.5	0.002	0.53	0.0	0.04	15.87	0.00	2.595	3.06	0.57	0.5	99.5	0.0	1.19	1.19	0.71	0.79	1.07	25968	3492	12	0	0	0	0	logfile
✔	9JTN	61813	2025-09-17	2024-10-05	3.1	3.40	3.11	3.4	0.004	0.77	0.0	0.04	18.28	0.00	2.217	2.31	0.00	3.8	96.2	0.0	2.08	0.58	0.82	4.25	3.4	0.003	0.55	0.0	0.04	18.03	0.00	2.583	3.55	2.32	2.9	97.1	0.0	2.10	0.28	0.56	0.83	3.81	2813	345	2	0	2	0	0	logfile
✔	9JTo	61814	2025-09-17	2024-10-05	3.3	3.49	3.38	3.6	0.012	0.74	0.0	0.04	16.88	0.00	2.257	4.96	0.00	4.7	95.3	0.0	2.01	0.57	0.80	2.42	3.6	0.003	0.53	0.0	0.04	15.96	0.00	2.353	3.01	1.98	5.0	95.0	0.0	2.61	0.92	0.55	0.81	2.23	2817	346	2	0	2	0	0	logfile
✔	9JTL	61811	2025-09-17	2024-10-05	3.4	3.58	3.47	3.6	0.004	0.84	0.0	0.04	16.57	0.00	2.253	6.77	0.33	4.1	95.9	0.0	1.43	0.55	0.78	2.44	3.6	0.003	0.63	0.0	0.04	16.63	0.00	2.552	5.70	2.31	4.7	95.3	0.0	1.91	0.89	0.56	0.80	2.77	2803	346	2	0	1	0	0	logfile
✔	9JTM	61812	2025-09-17	2024-10-05	2.9	3.27	3.03	3.3	0.005	0.90	0.0	0.05	18.22	0.00	2.337	4.08	0.00	6.1	93.9	0.0	1.14	0.49	0.78	3.11	3.3	0.003	0.58	0.0	0.04	16.29	0.00	2.499	2.66	0.99	5.3	94.7	0.0	1.96	0.34	0.51	0.80	2.75	2820	346	2	0	2	3	0	logfile

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