Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9UD9	64065	2025-09-18	2025-04-07	3.11	3.38	3.18	3.4	0.003	0.65	0.0	0.04	14.29	0.00	1.925	3.33	0.84	2.8	97.1	0.1	0.45	0.59	0.82	3.01	3.4	0.004	0.71	0.0	0.04	15.71	0.00	2.496	5.04	2.92	3.2	96.7	0.1	0.29	0.45	0.73	0.89	2.83	14665	1894	11	0	7	2	0	logfile
✔	9UD8	64064	2025-09-18	2025-04-06	3.75	4.05	3.79	4.0	0.008	0.89	0.0	0.04	16.09	0.00	2.199	10.13	3.50	3.7	96.3	0.0	-0.17	0.72	0.80	1.34	4.0	0.007	0.85	0.0	0.05	16.77	0.01	2.468	9.05	5.11	5.0	95.0	0.0	-0.09	0.96	0.72	0.80	1.05	14706	1894	11	0	8	0	0	logfile
✔	9UD6	64063	2025-09-18	2025-04-06	2.65	2.89	2.66	2.9	0.008	0.61	0.0	0.04	13.84	0.00	2.055	2.43	0.58	3.0	97.0	0.0	1.26	0.41	0.66	3.54	2.9	0.006	0.73	0.0	0.05	15.81	0.01	2.388	3.65	2.07	3.2	96.8	0.0	0.44	0.43	0.69	0.87	3.63	14743	1894	12	0	9	2	0	logfile
✔	9UD5	64062	2025-09-18	2025-04-06	2.9	3.19	2.94	3.2	0.004	0.67	0.0	0.04	13.90	0.00	2.209	3.13	0.07	2.6	97.2	0.2	0.30	0.45	0.70	4.18	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.411	3.52	2.00	2.8	97.1	0.1	0.16	1.31	0.68	0.87	3.96	14496	1921	15	0	10	37	0	logfile
✔	9UDA	64066	2025-09-18	2025-04-06	2.61	2.82	2.63	2.9	0.004	0.64	0.0	0.04	14.61	0.01	1.545	2.81	0.38	2.3	97.7	0.0	0.70	0.41	0.66	4.07	2.9	0.003	0.58	0.0	0.04	15.72	0.00	2.498	3.41	1.92	2.4	97.6	0.0	0.76	2.20	0.68	0.87	3.75	14963	1921	14	0	8	37	0	logfile
✔	9UD2	64059	2025-09-18	2025-04-06	2.59	2.79	2.59	2.8	0.009	0.75	0.0	0.05	15.49	0.01	2.131	4.49	1.61	3.3	96.6	0.1	0.12	0.68	0.87	3.28	2.8	0.003	0.61	0.0	0.04	16.20	0.00	2.484	4.15	2.58	3.1	96.9	0.1	0.43	0.27	0.67	0.86	2.84	14763	1900	12	0	8	5	0	logfile
✔	9o38	70072	2025-09-17	2025-04-06	3.0	3.78	3.02	3.4	0.003	0.56	0.0	0.04	17.71	0.00	2.062	7.07	2.44	2.5	97.5	0.0	1.09	0.67	0.70	1.62	3.5	0.003	0.73	0.0	0.04	17.40	0.00	2.381	9.72	2.81	2.7	97.3	0.0	1.04	0.88	0.68	0.81	2.23	9824	1258	6	0	0	0	0	logfile
✔	9UDG	64069	2025-09-18	2025-04-06	3.18	2.98	2.77	3.0	0.004	0.61	0.0	0.04	14.57	0.00	2.053	5.05	0.26	3.0	97.0	0.0	0.76	0.43	0.69	3.76	3.0	0.003	0.61	0.0	0.04	16.14	0.00	2.501	3.70	2.82	2.5	97.5	0.0	0.56	1.01	0.68	0.86	3.62	15132	1919	16	0	12	61	0	logfile
✔	9UDi	64070	2025-09-17	2025-04-06	3.01	3.17	2.93	3.2	0.004	0.66	0.0	0.04	24.51	0.01	2.120	12.75	0.00	10.6	89.4	0.0	-1.97	0.56	0.61	1.59	3.2	0.003	0.63	0.0	0.03	24.59	0.00	2.175	9.09	2.05	9.4	90.6	0.0	-1.19	1.01	0.56	0.60	1.39	4986	257	4	140	0	0	0	logfile
✔	9UD4	64061	2025-09-18	2025-04-06	3.31	3.66	3.32	3.7	0.003	0.69	0.0	0.04	15.44	0.00	2.169	6.13	1.36	3.2	96.7	0.1	-0.14	0.70	0.83	2.35	3.7	0.010	0.83	0.0	0.04	16.09	0.00	2.468	5.38	2.59	2.9	97.1	0.1	0.00	0.35	0.69	0.85	2.38	14720	1894	15	0	8	5	0	logfile
✔	9UDF	64068	2025-09-18	2025-04-06	2.93	3.24	3.05	3.2	0.004	0.68	0.0	0.04	17.07	0.01	2.146	6.23	1.98	4.7	95.1	0.2	-0.45	0.60	0.84	3.28	3.2	0.003	0.59	0.0	0.04	16.97	0.00	2.418	5.30	2.23	4.5	95.4	0.1	0.03	0.95	0.60	0.85	2.98	15124	1922	12	0	12	17	0	logfile
✔	9o12	49995	2025-09-18	2025-04-03	4.3	5.06	4.45	4.6	0.003	0.47	0.0	0.04	10.08	0.00	2.105	4.26	1.19	4.3	95.7	0.0	1.53	0.55	0.66	—	4.6	0.003	0.57	0.0	0.04	11.44	0.00	2.082	7.24	0.11	4.8	95.2	0.0	1.29	1.09	0.55	0.76	—	17136	1044	4	0	0	0	8772	logfile
✔	9o10	49993	2025-09-18	2025-04-03	3.0	3.74	3.14	3.5	0.003	0.46	0.0	0.04	9.24	0.00	2.209	4.31	0.23	1.9	98.1	0.0	2.37	0.64	0.84	3.37	3.6	0.004	0.78	0.0	0.04	14.81	0.01	2.231	5.76	2.00	1.8	98.2	0.0	3.13	1.33	0.53	0.80	3.12	16488	1044	4	0	0	0	8360	logfile
✔	9o11	49994	2025-09-18	2025-04-03	3.3	4.08	3.43	3.9	0.004	0.49	0.0	0.04	13.21	0.00	2.017	3.15	0.11	2.0	98.0	0.0	1.71	0.64	0.84	2.47	3.9	0.003	0.55	0.0	0.03	15.01	0.00	2.336	3.68	0.97	1.9	98.1	0.0	3.19	0.76	0.59	0.85	2.16	17136	1044	4	0	0	0	8772	logfile
✔	9o0i	49973	2025-09-17	2025-04-02	3.86	4.09	3.82	4.1	0.005	0.98	1.0	0.05	18.50	0.01	2.268	4.95	0.13	6.7	93.3	0.0	-2.62	0.65	0.84	1.93	4.1	0.003	0.64	0.0	0.04	18.42	0.00	2.374	9.68	3.17	6.8	93.0	0.1	-0.60	0.91	0.65	0.85	1.74	6677	825	3	0	0	0	0	logfile
✔	9UAV	63996	2025-09-18	2025-04-01	3.7	3.91	3.71	3.9	0.007	1.17	1.0	0.06	18.88	0.01	2.161	9.27	0.66	4.1	95.8	0.1	0.46	0.52	0.57	0.85	3.8	0.004	0.83	0.0	0.05	16.57	0.00	2.456	10.90	3.83	5.1	94.7	0.2	0.95	1.22	0.54	0.59	1.04	12831	1875	12	0	20	0	0	logfile
✔	9UA2	63976	2025-09-18	2025-03-31	2.83	3.08	2.92	3.1	0.003	0.60	0.0	0.04	19.48	0.00	2.202	8.28	0.40	4.6	95.1	0.3	-0.36	0.65	0.78	3.63	3.1	0.004	0.62	0.0	0.04	20.17	0.00	2.436	7.06	2.47	5.2	94.6	0.2	-0.53	0.98	0.69	0.81	3.27	14114	1408	6	127	4	0	0	logfile
✔	9UAA	63983	2025-09-18	2025-03-31	2.22	2.27	2.14	2.2	0.003	0.66	0.0	0.05	13.04	0.00	2.110	4.47	0.00	3.6	96.4	0.0	0.08	0.70	0.84	4.72	2.2	0.003	0.83	1.0	0.05	14.58	0.00	2.347	3.67	1.01	3.0	97.0	0.0	0.18	0.25	0.72	0.86	4.40	15994	2013	18	0	9	340	0	logfile
✔	9QQD	53298	2025-09-17	2025-03-31	3.1	4.12	3.12	3.7	0.014	1.96	9.0	0.09	20.81	0.04	2.429	8.02	13.84	4.7	94.5	0.9	-3.10	0.93	0.90	1.96	3.7	0.002	0.57	0.0	0.04	18.32	0.00	2.613	6.59	2.73	2.9	97.1	0.0	2.84	0.75	0.89	0.84	1.48	4592	579	1	0	0	0	0	logfile
✔	9UA9	63982	2025-09-18	2025-03-31	1.99	2.05	1.92	2.0	0.003	0.57	0.0	0.05	10.73	0.00	2.177	1.58	0.11	1.9	98.1	0.0	0.81	0.75	0.86	6.43	2.0	0.002	0.58	0.0	0.05	12.81	0.00	2.494	1.55	0.56	1.9	98.1	0.0	0.87	0.78	0.79	0.90	6.14	16357	2031	24	0	15	553	0	logfile

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