Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B5E	44209	2024-10-11	2024-03-22	2.81	3.27	2.83	3.1	0.003	0.44	0.0	0.04	9.40	0.00	2.037	1.39	1.15	1.7	98.3	0.0	1.33	0.67	0.74	3.55	3.1	0.004	0.53	0.0	0.04	13.17	0.00	2.000	2.62	2.21	1.6	98.4	0.0	1.57	1.55	0.76	0.85	3.37	10128	1283	6	0	4	0	0	logfile
✔	9B5Q	44221	2024-10-11	2024-03-22	2.95	3.41	2.98	3.3	0.003	0.46	0.0	0.04	9.51	0.00	2.007	1.41	1.31	2.0	98.0	0.0	1.02	0.76	0.83	3.93	3.3	0.003	0.50	0.0	0.04	12.81	0.00	2.062	3.38	1.21	2.0	98.0	0.0	1.33	1.16	0.79	0.86	3.26	8935	1133	5	0	4	0	0	logfile
✔	9B5V	44226	2024-10-11	2024-03-22	3.94	4.39	4.04	4.0	0.003	0.51	0.0	0.04	9.57	0.00	1.969	4.32	2.36	1.8	98.0	0.2	1.41	0.86	0.81	1.55	4.0	0.002	0.65	0.0	0.04	12.65	0.00	1.902	6.80	1.41	2.1	97.9	0.0	1.58	1.34	0.87	0.84	1.42	9527	1207	5	0	4	0	0	logfile
✔	9B5G	44211	2024-10-11	2024-03-22	2.67	3.11	2.69	3.0	0.003	0.47	0.0	0.04	10.03	0.00	2.032	1.42	0.94	2.0	98.0	0.0	1.47	0.69	0.80	4.23	3.0	0.004	0.53	0.0	0.04	13.49	0.00	1.984	2.95	1.51	1.5	98.5	0.0	1.45	2.40	0.77	0.87	3.53	9536	1209	6	0	4	0	0	logfile
✔	9B58	44203	2024-10-09	2024-03-22	3.39	3.89	3.38	3.8	0.003	0.45	0.0	0.04	10.33	0.00	1.812	3.00	1.10	4.2	95.8	0.0	0.81	0.81	0.81	2.15	3.8	0.004	0.62	0.0	0.04	13.59	0.00	2.455	6.71	1.84	3.9	96.1	0.0	0.57	0.59	0.85	0.85	1.54	4871	599	4	0	1	0	0	logfile
✔	9B5B	44206	2024-10-09	2024-03-22	3.31	3.84	3.35	3.7	0.003	0.44	0.0	0.04	9.36	0.00	1.782	2.27	1.29	3.9	96.1	0.0	1.85	0.82	0.82	2.04	3.7	0.004	0.57	0.0	0.04	12.45	0.00	2.474	6.20	1.84	3.5	96.5	0.0	2.10	1.62	0.82	0.84	2.00	4871	599	4	0	1	0	0	logfile
✔	9B5J	44214	2024-10-11	2024-03-22	2.86	3.33	2.88	3.2	0.004	0.46	0.0	0.04	9.89	0.00	2.161	1.53	1.04	2.9	97.1	0.0	1.00	0.68	0.78	3.39	3.2	0.002	0.51	0.0	0.04	13.71	0.00	2.453	3.32	0.94	1.7	98.3	0.0	1.30	1.11	0.67	0.78	2.76	9525	1209	6	0	2	0	0	logfile
✔	9B55	44200	2024-10-09	2024-03-22	3.23	3.71	3.23	3.6	0.004	0.50	0.0	0.04	9.79	0.00	1.834	2.89	0.18	4.6	95.4	0.0	0.82	0.79	0.84	2.87	3.6	0.004	0.52	0.0	0.04	12.54	0.00	2.441	3.82	0.92	3.7	96.3	0.0	1.17	1.11	0.74	0.81	2.60	4871	599	4	0	1	0	0	logfile
✔	9B5T	44224	2024-10-11	2024-03-22	3.16	3.62	3.24	3.5	0.003	0.45	0.0	0.04	9.54	0.00	2.024	1.58	0.91	1.9	98.1	0.0	1.13	0.74	0.82	2.66	3.5	0.003	0.50	0.0	0.04	13.01	0.00	1.961	4.62	2.02	1.9	98.1	0.0	1.31	1.19	0.78	0.85	2.43	8935	1133	5	0	4	0	0	logfile
✔	9B59	44204	2024-10-09	2024-03-22	3.49	3.95	3.48	3.8	0.003	0.43	0.0	0.04	9.73	0.00	1.779	1.86	0.74	3.4	96.6	0.0	1.74	0.82	0.79	1.99	3.8	0.004	0.57	0.0	0.04	13.24	0.00	2.429	5.58	1.66	3.7	96.3	0.0	1.28	0.61	0.83	0.83	1.67	4871	599	4	0	1	0	0	logfile
✔	8YRG	39542	2024-10-10	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.003	0.62	0.0	0.04	14.96	0.00	2.562	6.08	2.29	4.2	95.8	0.0	0.71	0.94	0.74	0.76	2.96	7977	1079	6	0	1	0	0	logfile
✔	8YRJ	39543	2024-10-09	2024-03-21	3.87	4.13	3.94	4.1	0.003	0.54	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.85	0.0	0.05	16.95	0.00	2.499	12.82	3.24	4.5	94.6	0.9	0.82	1.66	0.54	0.73	1.27	3748	454	7	0	9	0	0	logfile
✔	9B3T	44155	2024-10-14	2024-03-20	3.53	4.31	3.67	4.1	0.003	0.62	0.0	0.04	18.61	0.00	2.215	11.95	2.81	3.3	96.7	0.0	0.30	0.83	0.76	1.34	4.1	0.003	0.75	0.0	0.04	18.54	0.00	2.337	11.19	3.30	3.2	96.8	0.0	2.13	1.50	0.84	0.82	1.05	16389	2049	8	0	0	0	0	logfile
✔	9B4F	44179	2024-10-09	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.032	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.52	0.0	0.04	14.26	0.00	2.565	4.12	2.52	7.1	92.9	0.0	1.27	0.84	0.51	0.78	3.02	5612	670	4	0	2	0	0	logfile
✔	8YQQ	39502	2024-10-09	2024-03-19	3.95	2.96	3.87	3.4	0.008	1.28	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.003	0.71	0.0	0.05	15.59	0.00	2.017	7.39	2.97	6.2	93.8	0.0	-1.41	0.96	0.87	0.83	2.52	5141	649	4	0	6	0	0	logfile
✔	9B33	44124	2024-10-09	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2024-10-13	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.030	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.75	0.0	0.04	14.52	0.00	2.455	9.58	1.74	10.8	89.1	0.1	-0.74	1.59	0.67	0.81	1.89	14132	1780	8	0	0	0	0	logfile
✔	9B34	44125	2024-10-09	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	9Eo7	19846	2024-10-09	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9EoG	19854	2024-10-09	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.52	0.00	2.554	9.64	1.00	5.1	94.9	0.0	-1.95	1.09	0.37	0.88	3.73	3522	462	6	0	0	0	0	logfile

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