Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CLP	45728	2024-10-09	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.53	0.0	0.04	14.04	0.00	2.303	4.93	1.28	2.5	97.5	0.0	0.34	0.68	0.65	0.78	2.06	5035	650	5	0	11	0	0	logfile
✔	9G2W	50986	2024-10-09	2024-07-11	3.6	4.37	3.63	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.60	0.0	0.03	16.55	0.00	2.514	6.23	1.46	0.8	99.2	0.0	6.06	0.73	0.68	0.83	0.91	3838	478	2	0	0	0	0	logfile
✔	9G2U	50984	2024-10-09	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	9CKV	45655	2024-10-13	2024-07-09	3.19	3.71	3.28	3.6	0.005	0.66	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.53	0.0	0.04	14.92	0.00	1.924	2.08	0.28	4.8	95.2	0.0	-0.30	0.52	0.71	0.77	3.41	13268	872	11	0	26	0	6375	logfile
✔	9CK8	45644	2024-10-11	2024-07-08	3.04	3.30	3.16	3.3	0.005	0.89	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.003	0.59	0.0	0.04	13.31	0.00	2.451	4.34	2.22	2.4	97.6	0.0	0.10	0.82	0.64	0.84	4.22	9966	1001	30	0	283	0	0	logfile
✔	9CK3	45639	2024-10-09	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.004	0.60	0.0	0.06	18.90	0.00	2.640	2.79	4.51	3.9	96.1	0.0	-0.48	0.33	0.59	0.90	8.67	5748	840	12	0	0	0	0	logfile
✔	9iNY	60712	2024-10-10	2024-07-08	3.6	3.79	3.23	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.65	0.0	0.05	14.23	0.00	2.462	8.80	2.23	8.8	90.3	0.9	-2.67	1.37	0.67	0.84	2.27	8793	1125	3	0	0	0	0	logfile
✔	9CK7	45643	2024-10-11	2024-07-08	3.45	3.77	3.60	3.8	0.005	0.96	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.004	0.75	0.0	0.04	14.54	0.00	2.392	9.23	3.85	5.1	94.9	0.0	-0.93	0.88	0.67	0.81	3.04	10026	1001	32	0	292	0	0	logfile
✔	9CJ7	45624	2024-10-12	2024-07-05	3.0	3.67	3.21	3.4	0.006	0.95	0.0	0.06	16.20	0.01	2.107	2.90	0.00	4.2	95.8	0.0	-0.13	0.85	0.86	4.17	3.4	0.003	0.69	0.0	0.04	13.72	0.00	2.421	5.54	1.65	2.8	97.2	0.0	0.68	1.18	0.82	0.83	3.24	11501	1300	38	0	89	0	0	logfile
✔	9CJ8	45625	2024-10-11	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.08	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.005	0.84	0.0	0.05	15.81	0.00	2.407	12.92	3.10	4.2	95.8	0.0	-0.37	0.52	0.67	0.79	1.74	9750	989	22	0	269	0	0	logfile
✔	9iMV	60695	2024-10-10	2024-07-04	4.0	3.94	3.45	3.9	0.005	0.76	2.0	0.05	14.71	0.01	2.195	15.73	0.38	7.9	91.4	0.7	-1.09	0.73	0.85	—	3.9	0.003	0.66	0.0	0.04	16.96	0.00	2.251	10.91	2.16	8.3	91.6	0.1	-0.40	0.45	0.74	0.86	—	51420	6480	24	0	0	0	0	logfile
✔	9CiA	45615	2024-10-10	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.005	0.73	0.0	0.04	16.14	0.00	2.461	12.36	5.31	5.9	94.1	0.0	-0.53	0.56	0.60	0.75	1.65	7918	1025	13	0	1	0	0	logfile
✔	9iMA	60686	2024-10-10	2024-07-02	2.65	3.02	2.78	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.003	0.59	0.0	0.04	14.61	0.00	2.540	3.95	2.19	4.6	95.2	0.1	1.16	0.39	0.58	0.88	3.79	7472	933	6	0	6	0	0	logfile
✔	9Ci8	45614	2024-10-11	2024-07-02	3.01	3.35	3.04	3.4	0.004	0.80	0.0	0.05	16.95	0.01	2.258	6.33	4.93	3.7	96.3	0.0	-0.84	0.59	0.67	1.46	3.4	0.005	0.72	1.0	0.05	17.13	0.00	2.298	11.45	5.11	4.0	96.0	0.0	-0.22	0.99	0.61	0.72	1.49	10466	1382	12	0	0	0	0	logfile
✔	9iLP	60672	2024-10-10	2024-07-01	3.4	3.10	3.17	3.2	0.005	0.81	6.0	0.05	13.89	0.01	2.197	8.33	0.49	7.1	91.8	1.2	-0.33	0.63	0.81	2.30	3.2	0.005	1.03	8.0	0.05	16.69	0.00	2.244	6.21	2.74	7.2	92.4	0.5	-0.05	2.41	0.63	0.84	2.28	51180	6444	24	0	0	0	0	logfile
✔	9CGX	45588	2024-10-10	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.62	0.0	0.05	16.17	0.00	2.536	3.45	1.03	8.1	91.7	0.2	-2.75	1.36	0.36	0.77	5.04	6960	444	6	0	0	0	3540	logfile
✔	9CHQ	45598	2024-10-14	2024-07-01	3.0	2.94	3.01	3.2	0.013	1.73	4.0	0.09	11.63	0.02	2.549	0.00	0.00	1.4	98.6	0.0	-0.39	0.51	0.78	3.82	3.2	0.003	0.53	0.0	0.04	15.94	0.01	2.424	2.04	0.59	2.8	97.2	0.0	2.33	1.72	0.48	0.77	3.22	19104	1172	4	0	0	0	9596	logfile
✔	9CHS	45600	2024-10-14	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.003	0.51	0.0	0.04	14.62	0.00	2.362	2.99	1.37	2.9	97.1	0.0	2.62	1.73	0.50	0.79	2.42	19104	1172	4	0	0	0	9596	logfile
✔	9CHP	45597	2024-10-14	2024-07-01	3.3	3.33	3.28	3.4	0.013	1.75	0.0	0.09	11.61	0.02	2.568	0.00	0.00	1.8	98.2	0.0	-0.91	0.53	0.78	3.14	3.4	0.004	0.56	0.0	0.04	15.49	0.00	2.433	1.73	1.18	4.9	95.1	0.0	2.07	1.28	0.52	0.78	2.96	19104	1172	4	0	0	0	9596	logfile
✔	9CGZ	45589	2024-10-10	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.08	0.00	2.562	5.13	1.30	7.5	92.5	0.0	-2.35	0.95	0.38	0.79	5.07	6822	438	6	0	0	0	3480	logfile

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