Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZE2	60021	2024-11-17	2024-05-04	2.57	3.08	2.65	3.0	0.008	0.84	0.0	0.05	17.75	0.01	2.033	21.00	0.56	5.6	94.2	0.3	-1.29	0.61	0.72	1.22	3.0	0.005	0.92	0.0	0.05	17.56	0.01	2.360	18.04	2.54	5.1	94.9	0.0	0.16	0.56	0.55	0.73	1.67	12972	1568	8	0	8	0	0	logfile
✔	8ZE0	60019	2024-11-17	2024-05-04	2.54	3.65	2.56	3.2	0.002	0.55	0.0	0.04	17.02	0.00	2.254	8.17	0.28	2.3	97.4	0.3	2.35	0.68	0.71	2.45	3.3	0.004	0.78	0.0	0.04	16.97	0.00	2.440	10.57	2.04	2.2	97.5	0.3	2.55	1.56	0.68	0.85	3.04	12880	1568	4	0	0	0	0	logfile
✔	8ZE3	60022	2024-11-16	2024-05-04	3.17	3.37	3.22	3.5	0.004	0.68	0.0	0.04	19.03	0.00	2.064	9.22	2.88	3.8	96.2	0.0	1.13	0.51	0.77	1.87	3.4	0.004	0.72	1.0	0.04	18.22	0.00	1.590	8.57	4.09	3.3	96.7	0.0	2.38	0.36	0.60	0.83	1.83	12072	1496	8	0	4	0	0	logfile
✔	8ZDV	60014	2024-11-16	2024-05-03	2.8	3.02	2.82	3.1	0.006	0.84	0.0	0.06	14.60	0.01	2.022	8.78	0.00	1.8	98.2	0.0	-0.56	0.73	0.78	4.03	3.1	0.004	0.69	0.0	0.05	15.57	0.00	2.469	9.06	1.86	3.5	96.5	0.0	-0.92	0.45	0.72	0.80	4.26	12210	1473	15	0	33	0	0	logfile
✔	9BoG	44735	2024-11-15	2024-05-03	3.99	2.85	3.93	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	2.3	0.003	0.70	0.0	0.05	15.34	0.00	2.378	8.79	5.83	4.6	95.4	0.0	0.11	1.33	0.77	0.76	2.11	9370	1438	4	0	0	0	0	logfile
✔	8ZDZ	60018	2024-11-16	2024-05-03	2.64	3.50	2.71	3.3	0.004	0.63	0.0	0.04	17.96	0.00	2.260	6.41	2.35	2.7	97.3	0.0	2.47	0.61	0.84	1.84	3.3	0.003	0.66	0.0	0.04	17.84	0.00	2.497	5.55	2.27	2.5	97.5	0.0	3.99	1.41	0.58	0.81	1.86	12024	1496	4	0	0	0	0	logfile
✔	9F6J	50226	2024-11-15	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.62	0.0	0.04	17.92	0.00	2.525	4.86	2.12	2.2	97.8	0.0	0.64	1.68	0.76	0.81	1.61	9751	1118	4	32	1	0	0	logfile
✔	9F6L	50228	2024-11-15	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.61	0.0	0.04	17.93	0.00	2.339	4.32	1.11	1.5	98.5	0.0	1.49	0.69	0.76	0.82	0.71	9639	1118	4	26	3	0	0	logfile
✔	9F6K	50227	2024-11-15	2024-05-01	4.2	4.50	4.10	4.4	0.003	0.66	0.0	0.04	16.57	0.01	2.304	2.22	0.10	2.1	97.9	0.0	-1.36	0.74	0.79	—	4.3	0.003	0.61	0.0	0.04	16.27	0.00	2.480	4.85	0.00	2.1	97.9	0.0	0.95	1.65	0.76	0.81	—	9637	1118	4	26	1	0	0	logfile
✔	9BKK	44643	2024-11-14	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.61	0.0	0.04	16.12	0.00	2.424	5.36	2.25	2.3	97.7	0.0	1.51	1.15	0.56	0.73	2.12	6809	890	6	0	1	0	0	logfile
✔	8ZCJ	39931	2024-11-14	2024-04-29	3.09	3.33	3.11	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.003	0.69	0.0	0.04	16.47	0.00	2.245	9.43	3.67	4.7	95.3	0.0	-1.15	1.14	0.63	0.70	1.96	7808	1126	7	0	1	0	0	logfile
✔	8ZC5	39923	2024-11-14	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.003	0.67	0.0	0.05	14.99	0.00	2.515	8.18	1.71	4.4	95.6	0.0	-0.90	1.46	0.74	0.79	2.49	6515	830	8	0	2	0	0	logfile
✔	8ZC1	39919	2024-11-14	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.65	0.0	0.05	13.45	0.00	2.494	9.72	0.00	5.8	94.2	0.0	-1.44	0.60	0.74	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZBQ	39907	2024-11-14	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.003	0.64	0.0	0.04	17.04	0.00	2.475	12.59	4.08	6.7	93.3	0.0	-0.95	1.28	0.66	0.80	2.32	6346	779	2	0	0	0	0	logfile
✔	8ZBE	39901	2024-11-14	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.003	0.63	0.0	0.04	16.15	0.00	2.550	8.10	5.82	5.2	94.8	0.0	-0.93	0.44	0.61	0.67	1.04	7489	1113	7	0	1	0	0	logfile
✔	9F42	50181	2024-11-15	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.003	0.58	0.0	0.04	15.14	0.00	2.580	10.58	3.20	3.9	96.1	0.0	0.07	1.42	0.55	0.74	2.15	8465	1061	2	0	0	0	0	logfile
✔	8ZB9	39898	2024-11-14	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.534	6.92	5.16	9.3	90.7	0.0	-2.10	0.43	0.72	0.84	3.11	4904	622	2	0	0	0	0	logfile
✔	8ZBA	39899	2024-11-16	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.004	0.69	0.0	0.05	16.70	0.00	2.433	9.24	3.08	10.9	89.0	0.1	-2.51	2.02	0.72	0.79	1.88	9973	1267	4	0	0	0	0	logfile
✔	8Z9Z	39873	2024-11-17	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.49	0.0	0.04	18.32	0.00	2.441	7.82	3.77	2.3	97.7	0.0	3.23	0.28	0.61	0.79	1.33	12648	1519	8	0	6	0	0	logfile
✔	9BiT	44601	2024-11-15	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.57	0.0	0.04	18.31	0.00	2.248	4.97	2.80	6.8	93.2	0.0	0.47	0.32	0.63	0.85	2.60	9448	595	3	0	1	0	4734	logfile

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