Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HGP	34745	2024-11-15	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.77	0.0	0.05	11.39	0.00	2.380	12.71	0.10	9.6	90.4	0.0	-2.31	0.87	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8HGo	34744	2024-11-15	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.1	0.003	0.74	0.0	0.05	14.36	0.00	2.511	9.74	1.95	7.1	92.9	0.0	-2.37	0.79	0.74	0.74	3.09	9227	1178	6	0	8	0	0	logfile
✔	8F5Z	28869	2024-11-17	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.61	0.0	0.04	17.65	0.00	2.521	8.08	3.76	2.3	97.7	0.0	0.70	0.38	0.74	0.76	1.73	13598	1724	4	0	2	0	0	logfile
✔	8BoB	16140	2024-11-17	2022-11-15	2.94	3.13	2.90	3.0	0.009	0.87	0.0	0.06	15.31	0.00	2.208	10.38	3.17	4.2	95.5	0.3	-1.98	0.85	0.84	3.45	3.0	0.003	0.65	0.0	0.04	15.71	0.00	2.476	4.34	0.60	2.3	97.7	0.0	1.23	0.67	0.86	0.88	2.64	12712	1604	8	0	4	0	0	logfile
✔	8HG7	34737	2024-11-14	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.19	2.0	0.09	14.29	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.002	0.61	0.0	0.04	15.30	0.00	2.253	6.93	1.19	2.1	97.9	0.0	2.26	1.19	0.63	0.83	3.60	4808	619	3	0	3	2	0	logfile
✔	8Bo2	16138	2024-11-17	2022-11-14	3.1	3.79	3.14	3.5	0.017	1.94	10.0	0.11	14.14	0.02	2.505	4.29	0.47	6.7	93.2	0.1	-0.67	0.59	0.53	2.30	3.5	0.003	0.71	0.0	0.04	15.86	0.00	2.470	11.19	1.41	4.9	94.9	0.2	-0.70	1.11	0.77	0.80	1.37	14037	1803	6	0	0	0	0	logfile
✔	8BNZ	16137	2024-11-17	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.71	0.0	0.05	16.34	0.00	2.438	10.33	2.08	5.0	94.9	0.1	-0.65	1.60	0.70	0.73	2.14	14073	1807	6	0	0	0	0	logfile
✔	8HG0	34730	2024-11-14	2022-11-13	3.51	4.44	3.51	3.7	0.003	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	3.7	0.003	0.62	0.0	0.04	16.20	0.00	2.080	6.90	1.87	2.7	97.2	0.1	1.09	1.02	0.87	0.88	1.36	6470	790	4	0	4	0	0	logfile
✔	8HFY	34728	2024-11-16	2022-11-13	3.21	3.55	3.27	3.5	0.003	0.55	0.0	0.04	15.55	0.00	2.081	4.76	1.44	3.2	96.8	0.0	0.29	0.74	0.83	2.20	3.5	0.003	0.57	0.0	0.04	14.66	0.00	1.987	5.46	1.58	3.9	96.1	0.0	0.45	0.59	0.75	0.87	1.83	6568	789	6	0	10	0	0	logfile
✔	8F5B	28864	2024-11-18	2022-11-13	3.95	4.66	3.92	4.1	0.004	0.72	0.0	0.04	16.73	0.00	1.993	14.24	0.07	6.4	93.6	0.0	0.29	0.71	0.76	0.75	4.1	0.003	0.70	0.0	0.04	15.21	0.00	1.971	10.37	1.86	5.8	94.2	0.0	0.35	0.33	0.71	0.76	0.14	14152	1924	4	0	14	0	0	logfile
✔	8HG1	34731	2024-11-18	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.32	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.61	0.0	0.04	17.86	0.00	2.144	5.55	2.44	4.3	95.4	0.2	0.36	0.44	0.81	0.82	3.34	14155	1642	6	36	2	0	0	logfile
✔	8HFS	34726	2024-11-18	2022-11-12	2.98	3.10	2.88	3.1	0.003	0.65	0.0	0.04	16.84	0.00	2.164	12.21	3.28	7.5	92.5	0.0	0.18	0.67	0.78	0.87	3.1	0.003	0.64	0.0	0.04	17.13	0.00	2.448	9.91	5.84	7.4	92.6	0.0	0.31	0.34	0.67	0.79	0.93	16216	1798	11	0	3	0	0	logfile
✔	8F56	28861	2024-11-18	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.60	0.0	0.04	16.20	0.00	2.396	8.73	2.64	1.8	98.2	0.0	1.70	1.30	0.68	0.85	2.11	15631	2039	2	0	0	0	0	logfile
✔	8F4N	28855	2024-11-18	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.004	0.60	0.0	0.04	15.78	0.00	2.271	7.76	2.42	1.8	98.2	0.0	1.69	1.26	0.67	0.84	2.91	15574	2043	2	0	0	0	0	logfile
✔	8F53	28859	2024-11-18	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.003	0.47	0.0	0.03	16.27	0.00	2.239	4.45	3.90	0.1	99.9	0.0	3.56	0.75	0.61	0.81	2.30	51060	3240	60	0	0	0	26460	logfile
✔	8HFQ	34724	2024-11-20	2022-11-11	2.64	2.27	2.58	2.5	0.012	1.31	1.0	0.06	14.44	0.01	1.919	13.48	0.45	1.7	98.2	0.1	-0.95	0.76	0.80	3.80	2.4	0.005	0.78	2.0	0.04	16.99	0.01	1.840	11.34	2.21	1.5	98.5	0.0	2.03	1.61	0.79	0.84	4.00	54193	6851	76	0	54	0	0	logfile
✔	8BMQ	16121	2024-11-15	2022-11-10	3.6	3.94	3.58	4.0	0.006	0.76	0.0	0.05	15.48	0.00	2.190	7.37	0.00	5.5	94.5	0.0	-0.07	0.72	0.81	2.32	3.9	0.006	0.65	0.0	0.05	15.96	0.00	2.151	7.18	1.80	6.5	93.5	0.0	0.34	0.33	0.69	0.81	1.62	7784	987	6	0	3	0	0	logfile
✔	8BLP	16112	2024-11-15	2022-11-10	2.6	2.86	2.66	2.9	0.010	1.37	0.0	0.05	19.49	0.01	2.208	7.09	0.35	4.8	95.2	0.0	-1.57	0.67	0.86	4.68	2.9	0.003	0.56	0.0	0.04	15.30	0.00	2.623	5.98	1.96	2.2	97.8	0.0	2.52	1.20	0.65	0.87	4.08	9378	1065	9	0	66	66	0	logfile
✔	8BLQ	16113	2024-11-15	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.65	0.0	0.04	14.19	0.00	2.563	14.36	1.56	6.1	93.9	0.0	-1.83	1.43	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8HFF	34719	2024-11-14	2022-11-10	2.86	3.35	2.95	3.3	0.004	0.54	0.0	0.04	16.02	0.00	2.142	6.04	1.08	2.8	97.2	0.0	1.96	0.54	0.78	3.07	3.3	0.003	0.52	0.0	0.04	16.05	0.00	2.524	4.78	1.74	2.4	97.6	0.0	2.06	1.13	0.49	0.75	2.57	4399	547	2	0	2	2	0	logfile

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