Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BER	16009	2024-11-14	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.002	0.61	0.0	0.04	14.62	0.00	2.514	8.21	0.82	4.2	95.8	0.0	2.94	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8EW2	28640	2024-11-16	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.004	0.59	0.0	0.04	17.53	0.00	2.562	9.79	4.01	3.3	96.7	0.0	0.88	0.34	0.78	0.88	2.21	10340	1356	4	0	0	0	0	logfile
✔	8EW0	28639	2024-11-17	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.003	0.50	0.0	0.04	18.43	0.00	2.476	5.28	3.93	1.5	98.4	0.1	2.66	0.87	0.69	0.91	3.65	13636	1747	6	0	0	0	0	logfile
✔	8EW3	28641	2024-11-16	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.59	0.0	0.04	13.49	0.00	1.058	4.66	0.64	2.5	97.5	0.0	1.53	1.18	0.75	0.89	3.30	11902	1540	9	0	5	0	0	logfile
✔	8EVJ	28631	2024-11-18	2022-10-20	4.1	4.84	4.24	3.9	0.005	0.94	0.0	0.05	26.05	0.01	2.284	6.05	0.09	4.0	96.0	0.0	-1.52	0.92	0.86	—	3.9	0.006	0.74	0.0	0.04	25.87	0.00	1.980	18.22	0.00	4.9	95.1	0.0	0.44	0.48	0.92	0.87	—	15951	1301	13	276	0	0	0	logfile
✔	8EVU	28637	2024-11-16	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.10	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.57	0.0	0.04	13.49	0.00	1.117	3.62	0.72	2.2	97.8	0.0	1.36	0.42	0.76	0.91	3.95	11902	1540	9	0	5	0	0	logfile
✔	8BDZ	15995	2024-11-14	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.005	0.65	0.0	0.04	14.44	0.01	2.524	7.45	1.37	2.0	98.0	0.0	2.84	0.47	0.50	0.87	2.74	3309	414	3	0	0	0	0	logfile
✔	8EVG	28628	2024-11-18	2022-10-20	2.75	3.37	2.90	3.1	0.020	2.03	0.0	0.13	28.95	0.01	1.794	13.48	0.29	2.8	97.2	0.0	1.12	0.84	0.83	2.42	3.1	0.003	0.63	0.0	0.04	27.43	0.00	2.079	8.03	1.55	2.7	97.3	0.0	1.60	1.27	0.82	0.85	2.66	15577	1212	12	294	0	0	0	logfile
✔	8EVH	28629	2024-11-18	2022-10-20	2.85	3.12	2.96	3.0	0.005	0.72	3.0	0.05	26.46	0.00	1.975	8.93	0.09	3.3	96.7	0.0	1.34	0.78	0.83	2.63	3.0	0.004	0.79	1.0	0.04	26.40	0.00	2.302	7.89	1.81	3.0	97.0	0.0	1.67	1.61	0.78	0.86	2.98	16077	1301	13	282	0	0	0	logfile
✔	8EVi	28630	2024-11-18	2022-10-20	2.64	3.19	2.79	3.1	0.005	0.68	3.0	0.05	26.59	0.00	2.045	8.89	0.09	3.2	96.8	0.0	1.34	0.71	0.79	3.10	3.1	0.004	0.60	0.0	0.04	26.43	0.00	2.396	6.65	2.53	2.7	97.3	0.0	1.52	0.39	0.64	0.74	3.20	16157	1301	13	286	0	0	0	logfile
✔	8H77	34519	2024-11-18	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.003	0.64	0.0	0.04	17.50	0.00	0.929	7.71	1.79	4.0	96.0	0.0	-0.44	0.66	0.69	0.76	2.10	15726	1930	8	0	4	0	0	logfile
✔	8EUE	28612	2024-11-16	2022-10-18	3.48	4.06	3.85	3.7	0.007	1.33	0.0	0.06	31.23	0.01	2.242	6.41	0.00	3.8	96.2	0.0	-2.48	0.78	0.80	0.90	3.7	0.004	0.97	0.0	0.04	30.25	0.01	2.311	18.25	5.07	4.1	95.9	0.0	0.78	0.44	0.78	0.80	0.72	11926	751	10	294	0	0	0	logfile
✔	8EUJ	28614	2024-11-16	2022-10-18	3.36	4.07	3.84	3.7	0.006	1.22	0.0	0.06	30.77	0.01	2.233	5.43	0.00	2.6	97.4	0.0	-2.60	0.71	0.76	0.82	3.7	0.004	0.82	0.0	0.04	29.89	0.01	2.322	17.37	5.05	3.4	96.6	0.0	0.36	1.32	0.71	0.78	0.56	11913	747	10	294	0	0	0	logfile
✔	8EU8	28608	2024-11-17	2022-10-18	3.73	2.48	3.71	2.2	0.014	1.81	0.0	0.10	12.70	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.2	0.003	0.71	0.0	0.05	15.30	0.00	2.441	6.19	2.73	3.1	96.9	0.0	-0.01	0.64	0.75	0.75	1.93	14181	1692	24	0	63	0	0	logfile
✔	8EU2	28602	2024-11-15	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.13	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.7	0.004	0.66	0.0	0.04	28.52	0.01	2.498	9.51	5.26	1.6	98.4	0.0	2.61	0.45	0.84	0.85	2.12	8682	524	8	220	0	0	0	logfile
✔	8ETV	28600	2024-11-15	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.21	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.005	0.64	0.0	0.04	28.69	0.00	2.393	11.88	3.89	2.0	98.0	0.0	2.10	0.44	0.81	0.80	1.23	8682	524	8	220	0	0	0	logfile
✔	8BCP	15967	2024-11-18	2022-10-17	3.88	3.53	3.81	3.7	0.003	0.53	0.0	0.04	17.06	0.00	2.151	10.41	0.30	3.2	96.7	0.1	-0.67	0.61	0.59	0.14	3.6	0.003	0.61	0.0	0.04	17.69	0.00	2.382	9.27	3.41	2.5	97.5	0.1	-0.98	2.12	0.75	0.80	2.14	18171	2337	9	0	0	0	0	logfile
✔	8BCU	15968	2024-11-19	2022-10-17	4.05	3.79	3.99	3.9	0.004	0.55	0.0	0.04	16.80	0.00	1.950	12.32	0.15	6.6	93.3	0.1	-0.88	0.75	0.66	—	3.9	0.004	0.68	0.0	0.05	14.13	0.00	2.414	12.38	0.00	4.1	95.9	0.0	-1.28	2.10	0.83	0.82	—	18279	2349	9	0	0	0	0	logfile
✔	8BCZ	15971	2024-11-15	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.52	0.0	0.04	13.46	0.00	2.400	5.38	3.22	2.5	97.5	0.0	0.73	0.43	0.62	0.83	3.82	8505	1100	9	0	0	0	0	logfile
✔	8ET6	28586	2024-11-15	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.90	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.003	0.56	0.0	0.03	14.99	0.00	2.374	5.88	2.36	4.3	95.7	0.0	1.25	1.34	0.51	0.71	1.63	8092	532	2	0	2	0	4007	logfile

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