Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DVU	27745	2024-11-14	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	16.46	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.004	0.59	0.0	0.04	17.92	0.00	2.006	4.91	3.18	7.5	92.5	0.0	0.26	0.42	0.70	0.84	3.57	6170	669	3	36	3	0	0	logfile
✔	8DVS	27744	2024-11-14	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	15.92	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.003	0.58	0.0	0.04	17.35	0.00	2.479	5.64	3.12	8.5	91.5	0.0	0.46	0.47	0.70	0.85	3.46	6058	682	3	26	3	0	0	logfile
✔	7YMD	33927	2024-11-14	2022-07-28	4.176	4.25	4.12	4.2	0.002	0.48	0.0	0.04	12.74	0.00	2.026	9.75	0.00	7.4	92.6	0.0	0.16	0.61	0.69	—	4.2	0.004	0.72	0.0	0.04	14.05	0.00	2.450	11.25	0.00	8.5	91.5	0.0	-0.85	0.52	0.63	0.73	—	5653	705	3	0	0	0	0	logfile
✔	8AJL	15482	2024-11-19	2022-07-28	2.77	3.00	2.84	3.0	0.006	0.73	0.0	0.05	12.92	0.01	1.956	1.79	0.03	4.7	95.3	0.0	-0.64	0.47	0.65	4.04	3.0	0.003	0.59	0.0	0.04	14.50	0.00	2.331	2.98	0.93	3.3	96.7	0.0	-0.20	1.26	0.61	0.80	3.82	51875	3327	15	0	63	0	25130	logfile
✔	7YML	33931	2024-11-19	2022-07-28	2.6	2.70	2.57	2.7	0.019	1.86	0.0	0.06	22.92	0.02	2.035	11.68	1.88	2.6	97.4	0.0	1.32	0.80	0.88	4.86	2.7	0.003	0.68	0.0	0.04	16.54	0.00	2.023	9.11	1.81	2.5	97.5	0.0	2.56	0.93	0.80	0.91	3.88	18554	1848	50	0	89	7	0	logfile
✔	7YMJ	33930	2024-11-14	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.002	0.55	0.0	0.04	15.11	0.00	2.579	1.79	2.80	3.3	96.7	0.0	0.91	0.36	0.63	0.84	2.18	3085	396	3	0	1	0	0	logfile
✔	8AJM	15484	2024-11-16	2022-07-28	2.83	3.35	2.87	3.0	0.008	0.82	0.0	0.07	11.45	0.01	2.252	1.43	0.52	2.3	97.7	0.0	0.01	0.88	0.82	3.72	3.0	0.003	0.65	0.0	0.05	13.93	0.00	2.512	4.88	0.89	3.3	96.7	0.0	-0.40	3.71	0.87	0.81	3.46	12106	1540	3	0	0	0	0	logfile
✔	7YMN	33934	2024-11-14	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.003	0.59	0.0	0.05	13.64	0.00	2.607	5.23	0.00	5.4	94.6	0.0	-4.44	0.34	0.38	0.81	4.09	3468	456	6	0	0	0	0	logfile
✔	8AJN	15485	2024-11-16	2022-07-28	3.0	3.89	3.13	2.9	0.006	0.94	0.0	0.05	12.63	0.01	2.334	1.89	0.60	3.8	96.2	0.0	-1.11	0.79	0.59	0.88	2.9	0.004	0.79	0.0	0.05	15.55	0.00	2.504	16.38	1.72	5.7	94.3	0.0	-1.48	1.55	0.82	0.60	1.21	12009	1530	2	0	0	0	0	logfile
✔	7YMH	33928	2024-11-14	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.79	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.003	0.63	0.0	0.04	14.97	0.00	2.234	5.13	3.54	2.5	97.5	0.0	-0.28	0.54	0.66	0.79	1.80	3948	542	4	0	1	0	0	logfile
✔	8DVD	27735	2024-11-20	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.92	0.0	0.05	13.11	0.01	2.389	11.38	0.00	8.4	91.5	0.1	-1.56	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	8DV2	27731	2024-11-14	2022-07-27	3.5	3.88	3.57	3.7	0.018	1.68	1.0	0.10	10.74	0.01	2.222	1.33	0.14	1.9	98.0	0.1	-0.17	0.78	0.79	2.69	3.7	0.004	0.75	0.0	0.05	15.46	0.00	2.531	9.78	2.72	2.9	97.0	0.1	1.23	4.15	0.78	0.80	1.58	6545	796	4	0	7	0	0	logfile
✔	8DV1	27730	2024-11-14	2022-07-27	3.4	3.67	3.39	3.5	0.018	1.71	2.0	0.10	10.89	0.01	2.277	1.25	0.43	2.5	97.5	0.0	-0.24	0.79	0.80	2.48	3.5	0.004	0.73	0.0	0.05	15.47	0.00	2.339	9.32	2.15	3.9	96.1	0.0	0.70	1.54	0.80	0.82	1.95	6543	796	4	0	7	0	0	logfile
✔	8DUE	27719	2024-11-20	2022-07-27	2.9	2.30	3.00	3.0	0.003	0.53	0.0	0.04	13.30	0.00	1.926	12.84	3.40	5.9	94.1	0.0	0.26	0.55	0.66	1.93	2.9	0.003	0.63	0.0	0.04	16.50	0.00	1.995	10.37	3.35	5.9	94.1	0.0	-0.06	1.32	0.61	0.70	1.40	20904	2592	12	10	10	0	0	logfile
✔	7YM8	33924	2024-11-14	2022-07-27	2.92	3.14	2.90	3.2	0.006	0.86	0.0	0.05	16.01	0.01	2.331	4.04	0.00	4.2	95.8	0.0	-3.62	0.68	0.81	3.68	3.2	0.003	0.56	0.0	0.04	16.18	0.00	2.569	6.05	1.40	3.3	96.7	0.0	0.36	0.40	0.66	0.82	3.33	4287	556	4	0	2	0	0	logfile
✔	8DUA	27718	2024-11-18	2022-07-27	4.32	5.26	4.35	4.3	0.005	0.79	4.0	0.06	19.51	0.00	1.889	5.05	0.19	5.6	94.2	0.2	-1.65	0.70	0.61	—	4.3	0.003	0.73	0.0	0.05	12.93	0.00	2.336	8.46	0.06	6.4	93.6	0.0	-1.46	1.77	0.79	0.81	—	15612	1815	33	0	87	0	0	logfile
✔	8AJA	15475	2024-11-19	2022-07-27	2.59	2.78	2.62	2.8	0.006	0.80	0.0	0.05	12.81	0.01	2.036	1.99	0.00	4.1	95.9	0.0	-0.47	0.66	0.79	4.37	2.8	0.005	0.67	0.0	0.05	15.52	0.00	2.261	2.97	1.86	3.7	96.3	0.0	0.03	1.33	0.65	0.82	4.04	51153	3270	15	0	57	0	24870	logfile
✔	8DTo	27706	2024-11-20	2022-07-26	3.57	3.93	3.47	3.6	0.007	0.94	0.0	0.06	19.84	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.005	0.76	1.0	0.05	14.24	0.00	2.343	5.59	1.32	4.8	95.2	0.0	-0.62	0.30	0.82	0.86	2.60	20923	2445	54	0	146	0	0	logfile
✔	8DTM	27705	2024-11-16	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.002	0.54	0.0	0.04	16.88	0.00	2.471	4.85	2.60	5.9	94.1	0.0	-0.73	1.13	0.71	0.81	2.62	6498	802	3	0	0	0	0	logfile
✔	8DTP	27707	2024-11-20	2022-07-26	2.7	2.81	2.75	2.8	0.004	0.63	0.0	0.05	12.19	0.00	1.973	9.42	1.92	5.2	94.8	0.0	0.52	0.65	0.79	3.58	2.8	0.003	0.59	0.0	0.04	16.93	0.00	1.979	7.69	2.41	5.3	94.7	0.0	0.76	1.00	0.71	0.85	2.72	20944	2592	12	12	10	0	0	logfile

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