Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ASQ	43823	2024-11-17	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	9ASJ	43816	2024-11-16	2024-02-26	3.5	3.98	3.57	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.67	0.0	0.04	18.91	0.00	2.460	10.56	2.72	5.1	94.7	0.1	-0.14	1.07	0.69	0.70	1.16	11626	1482	4	0	2	0	0	logfile
✔	9ASN	43820	2024-11-16	2024-02-26	3.2	4.03	3.21	3.2	0.005	0.61	0.0	0.04	17.26	0.00	2.197	6.23	0.00	3.6	96.4	0.0	1.14	0.77	0.69	2.28	3.2	0.004	0.54	0.0	0.04	17.41	0.00	2.262	4.26	0.66	3.4	96.6	0.0	1.54	0.31	0.83	0.86	2.01	11697	1184	6	97	4	2	0	logfile
✔	9ASP	43822	2024-11-16	2024-02-26	3.2	4.18	3.26	3.3	0.004	0.62	0.0	0.04	19.27	0.00	2.196	10.51	0.09	5.1	94.9	0.0	0.10	0.77	0.67	1.49	3.2	0.003	0.56	0.0	0.04	19.45	0.00	2.492	6.84	2.15	4.7	95.3	0.0	0.43	1.21	0.83	0.84	1.51	12227	1256	6	96	4	1	0	logfile
✔	8S61	19754	2024-11-14	2024-02-26	3.53	3.76	3.50	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.005	0.64	0.0	0.04	17.15	0.00	2.585	5.15	4.51	6.5	93.5	0.0	-0.34	0.32	0.69	0.85	2.20	3990	502	3	0	1	0	0	logfile
✔	8YGH	39250	2024-11-17	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.004	0.64	0.0	0.04	16.42	0.00	2.403	7.64	1.21	4.5	95.5	0.0	0.39	0.30	0.90	0.88	2.28	12244	1510	2	0	0	0	0	logfile
✔	8YFX	39232	2024-11-14	2024-02-25	3.56	3.75	3.47	3.7	0.004	0.65	0.0	0.04	16.59	0.00	2.071	9.89	0.28	6.1	93.9	0.0	0.74	0.52	0.71	1.68	3.7	0.003	0.64	0.0	0.04	16.95	0.00	2.485	8.45	1.85	5.2	94.8	0.0	1.59	1.17	0.51	0.70	1.55	6588	792	2	0	0	0	0	logfile
✔	8YFU	39230	2024-11-15	2024-02-25	4.59	4.78	4.51	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.64	0.0	0.04	13.21	0.00	2.374	9.56	0.00	4.3	95.4	0.3	2.21	0.42	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2024-11-14	2024-02-25	3.3	3.51	3.27	3.6	0.011	1.51	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.003	0.67	0.0	0.05	13.67	0.00	2.614	4.18	3.14	2.9	96.8	0.2	0.22	1.18	0.70	0.81	3.30	3013	419	4	0	2	0	0	logfile
✔	8YFW	39231	2024-11-15	2024-02-25	3.65	3.82	3.63	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.68	0.0	0.04	16.31	0.00	2.485	10.26	3.56	4.0	95.8	0.3	2.49	0.50	0.56	0.71	0.65	8419	1161	2	0	0	0	0	logfile
✔	8YFT	39229	2024-11-14	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.63	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.8	0.003	0.64	0.0	0.04	14.76	0.00	2.515	6.78	2.03	3.9	96.0	0.1	0.26	1.75	0.87	0.79	1.92	6508	783	7	0	10	0	0	logfile
✔	8YF5	39211	2024-11-19	2024-02-24	3.78	4.22	3.58	3.8	0.003	0.53	0.0	0.04	13.98	0.00	2.098	11.01	0.00	4.6	95.4	0.0	1.15	0.85	0.84	1.64	3.8	0.006	0.68	0.0	0.04	15.43	0.00	2.413	10.19	1.03	5.5	94.5	0.0	1.08	0.37	0.85	0.84	1.57	18476	2250	5	0	0	0	0	logfile
✔	9ASB	43811	2024-11-19	2024-02-24	3.4	2.15	—	2.9	0.005	0.67	0.0	0.04	13.48	0.00	2.168	9.24	0.00	3.4	96.6	0.0	-0.23	0.79	0.79	3.28	2.9	0.004	0.59	0.0	0.04	15.52	0.00	2.289	7.57	1.75	3.4	96.6	0.0	-0.07	0.38	0.81	0.82	2.92	18185	2243	13	0	26	0	0	logfile
✔	8YFD	39220	2024-11-14	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.63	0.0	0.04	17.88	0.00	2.502	8.14	4.26	6.5	93.3	0.3	0.85	1.16	0.56	0.77	1.25	6588	792	2	0	0	0	0	logfile
✔	8YFE	39221	2024-11-18	2024-02-24	3.47	4.22	3.29	3.7	0.002	0.54	0.0	0.04	13.90	0.00	2.126	10.77	0.05	4.4	95.6	0.0	-0.05	0.86	0.81	1.57	3.7	0.003	0.60	0.0	0.04	15.65	0.00	2.304	7.87	1.73	4.7	95.3	0.0	0.42	0.38	0.87	0.82	1.54	17315	2107	4	0	0	0	0	logfile
✔	8YF4	39210	2024-11-14	2024-02-24	3.41	3.59	3.35	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.55	0.0	0.04	17.30	0.00	2.493	6.34	4.29	5.0	95.0	0.0	1.78	1.59	0.54	0.73	1.47	6620	786	4	0	2	0	0	logfile
✔	8YF0	39206	2024-11-15	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	8YET	39203	2024-11-16	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.65	0.0	0.04	16.47	0.00	2.414	8.26	0.00	5.6	94.2	0.2	1.22	1.62	0.63	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8S5i	19736	2024-11-18	2024-02-23	3.1	3.24	3.20	3.3	0.004	0.58	0.0	0.04	13.53	0.00	2.087	3.04	0.58	1.9	97.8	0.2	0.50	0.57	0.65	2.82	3.2	0.003	0.57	0.0	0.04	15.36	0.00	2.381	5.41	1.29	2.5	97.4	0.1	0.88	0.75	0.65	0.77	2.87	47880	3042	12	0	6	0	23952	logfile
✔	8YF1	39207	2024-11-15	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile

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