Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V6A	31740	2024-11-16	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.003	0.71	0.0	0.04	16.53	0.00	2.497	11.27	4.90	4.0	96.0	0.0	-1.06	0.46	0.71	0.69	2.05	8584	1122	6	0	1	0	0	logfile
✔	7V6C	31742	2024-11-18	2021-08-20	3.3	2.45	3.20	3.3	0.012	1.56	1.0	0.09	15.17	0.01	2.230	6.10	3.90	3.5	96.5	0.0	-0.64	0.64	0.76	2.40	3.2	0.003	0.58	0.0	0.04	16.63	0.00	2.565	7.24	2.11	2.8	97.2	0.0	1.06	1.84	0.70	0.78	2.29	15643	1800	6	54	0	0	0	logfile
✔	7V6B	31741	2024-11-17	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.60	0.0	0.04	16.01	0.00	2.512	7.21	2.57	2.5	97.5	0.0	0.78	2.25	0.68	0.79	2.18	13633	1678	2	0	0	0	0	logfile
✔	7RX0	24721	2024-11-15	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.003	0.82	0.0	0.04	17.22	0.00	2.094	16.09	3.03	4.4	95.6	0.0	-0.25	0.80	0.59	0.82	0.72	9673	1182	7	0	83	0	0	logfile
✔	7PiM	13442	2024-11-16	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7V6Y	31753	2024-11-14	2021-08-20	3.5	3.75	—	3.8	0.014	1.85	9.0	0.13	16.47	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.68	0.0	0.04	15.62	0.01	2.342	7.83	4.40	4.6	95.4	0.0	0.83	1.19	0.62	0.76	2.06	7484	990	3	0	8	0	0	logfile
✔	7RW8	24710	2024-11-17	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.73	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.002	0.52	0.0	0.04	14.66	0.00	2.364	4.95	0.65	3.2	96.8	0.0	2.17	0.98	0.89	0.85	1.83	12572	1712	4	0	0	0	0	logfile
✔	7RW9	24711	2024-11-16	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.003	0.67	0.0	0.04	15.00	0.00	2.488	7.03	2.02	4.6	95.1	0.3	1.35	0.55	0.88	0.84	0.97	10365	1456	4	0	0	0	0	logfile
✔	7Pii	13437	2024-11-16	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.13	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.65	0.0	0.04	28.49	0.00	2.532	6.42	2.18	2.5	97.5	0.0	1.84	0.98	0.81	0.88	3.37	11192	779	12	245	0	0	0	logfile
✔	7RWC	24714	2024-11-16	2021-08-19	3.8	4.08	3.75	4.0	0.004	0.60	0.0	0.04	12.87	0.00	2.175	8.83	0.09	5.6	94.4	0.1	0.33	0.71	0.72	1.25	4.1	0.003	0.57	0.0	0.04	14.83	0.00	2.399	7.50	2.96	4.6	95.3	0.1	0.59	0.34	0.74	0.77	1.11	12110	1705	5	0	8	0	0	logfile
✔	7RW6	24709	2024-11-17	2021-08-19	2.55	2.65	—	2.8	0.003	0.55	0.0	0.04	11.59	0.00	2.167	9.15	0.00	5.9	94.1	0.0	0.17	0.86	0.86	4.11	2.8	0.003	0.66	0.0	0.04	14.95	0.00	2.522	7.29	1.58	5.2	94.8	0.0	0.12	0.40	0.87	0.88	3.41	13130	1634	6	0	2	0	0	logfile
✔	7PHR	13427	2024-11-16	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.73	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.004	0.52	0.0	0.04	14.56	0.00	2.540	5.35	2.17	2.5	97.5	0.0	0.73	0.38	0.66	0.81	3.45	11511	1443	14	0	6	0	0	logfile
✔	7V5G	31724	2024-11-18	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.86	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.005	0.77	0.0	0.05	12.19	0.00	2.328	18.46	0.00	4.6	95.4	0.0	-0.73	2.24	0.89	0.79	—	48150	6193	28	0	0	0	0	logfile
✔	7V5D	31723	2024-11-15	2021-08-17	3.4	4.15	—	4.0	0.010	0.94	0.0	0.05	16.06	0.01	2.215	8.62	0.63	8.5	91.5	0.0	-2.76	0.65	0.81	1.75	4.0	0.003	0.66	0.0	0.04	17.16	0.00	2.574	7.32	2.95	4.4	95.6	0.0	0.69	0.93	0.65	0.81	1.50	8822	1140	3	0	1	0	0	logfile
✔	7PHG	13415	2024-11-14	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.003	0.65	0.0	0.04	13.53	0.00	2.408	12.06	0.00	10.5	89.5	0.0	-3.39	0.95	0.77	0.65	—	6469	427	3	0	0	0	3160	logfile
✔	7RUG	24705	2024-11-14	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.003	0.51	0.0	0.04	13.15	0.00	2.414	10.32	0.00	1.6	98.4	0.0	2.98	1.63	0.59	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7V5C	31722	2024-11-15	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.004	0.71	0.0	0.04	16.02	0.00	1.877	5.24	3.52	4.4	95.6	0.0	-0.89	0.97	0.66	0.86	2.53	8916	1144	4	0	6	0	0	logfile
✔	7RU4	24696	2024-11-14	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.76	0.0	0.05	14.77	0.00	2.508	6.45	2.47	6.7	93.3	0.0	-0.86	1.35	0.76	0.82	2.42	3382	428	5	0	4	0	0	logfile
✔	7RUC	24702	2024-11-16	2021-08-16	3.6	3.41	3.38	3.4	0.004	0.53	0.0	0.04	14.65	0.00	1.772	7.64	0.00	4.6	95.4	0.0	1.89	0.68	0.76	2.48	3.4	0.003	0.61	0.0	0.04	16.48	0.01	1.977	6.62	2.36	2.3	97.7	0.0	1.79	0.48	0.76	0.84	2.24	10766	1344	9	0	5	0	0	logfile
✔	7RU6	24698	2024-11-14	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile

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