Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RU6	24698	2024-11-14	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7RU8	24699	2024-11-14	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.39	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.004	0.77	0.0	0.05	15.08	0.00	2.535	11.80	3.49	7.1	92.9	0.0	-1.22	1.01	0.78	0.75	0.97	3198	405	5	0	3	0	0	logfile
✔	7RU9	24700	2024-11-16	2021-08-16	3.3	2.93	3.26	3.2	0.003	0.59	0.0	0.07	14.94	0.01	1.899	7.92	0.00	2.9	97.1	0.0	1.87	0.65	0.78	2.93	3.2	0.004	0.58	0.0	0.04	16.57	0.00	1.937	6.97	1.26	2.5	97.5	0.0	1.87	0.55	0.73	0.84	2.59	11595	1448	10	0	5	0	0	logfile
✔	7RUA	24701	2024-11-16	2021-08-16	3.4	3.27	3.30	3.3	0.003	0.57	0.0	0.04	14.91	0.01	1.920	7.52	0.00	2.2	97.8	0.0	1.77	0.65	0.76	2.85	3.3	0.004	0.65	0.0	0.04	16.75	0.00	2.054	9.25	2.82	2.9	97.1	0.0	1.66	1.29	0.75	0.85	2.65	11603	1448	10	0	5	0	0	logfile
✔	7RTV	24690	2024-11-14	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.62	0.00	2.411	14.38	4.22	2.5	97.5	0.0	3.27	0.50	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7RTT	24688	2024-11-14	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.002	0.55	0.0	0.03	15.50	0.00	2.374	5.10	0.75	4.1	95.9	0.0	3.98	1.65	0.60	0.73	0.21	6268	791	8	0	14	0	0	logfile
✔	7RTU	24689	2024-11-14	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.60	0.0	0.04	16.20	0.00	2.479	5.44	2.35	2.8	97.2	0.0	4.15	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	7RTW	24691	2024-11-14	2021-08-15	3.23	3.74	—	3.7	0.004	0.68	0.0	0.05	20.75	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.003	0.65	0.0	0.04	16.03	0.00	2.357	7.88	2.38	3.0	97.0	0.0	2.55	0.42	0.60	0.72	0.84	5644	701	8	0	17	0	0	logfile
✔	7RTJ	24682	2024-11-19	2021-08-13	3.8	3.82	—	3.8	0.008	1.03	0.0	0.05	20.09	0.01	2.224	9.50	1.17	5.6	94.4	0.0	0.00	0.65	0.75	1.48	3.8	0.003	0.73	0.0	0.04	18.00	0.01	2.446	11.40	3.07	5.1	94.9	0.0	0.84	1.85	0.64	0.76	1.59	13352	1592	8	0	36	0	0	logfile
✔	7RTM	24683	2024-11-15	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	7RTo	24685	2024-11-14	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.62	0.0	0.04	16.54	0.00	2.453	5.78	1.97	4.9	95.1	0.0	1.61	0.49	0.32	0.77	1.74	6607	888	3	0	0	0	0	logfile
✔	7RTN	24684	2024-11-14	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.003	0.60	0.0	0.04	16.66	0.00	2.556	5.59	3.42	5.0	95.0	0.0	1.29	0.35	0.31	0.79	2.97	6018	810	3	0	0	0	0	logfile
✔	7V4L	31715	2024-11-15	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.004	0.76	0.0	0.05	16.39	0.01	2.164	16.02	2.73	8.0	91.9	0.1	-2.76	0.74	0.58	0.61	1.38	9345	1190	5	0	0	0	0	logfile
✔	7PFX	13383	2024-11-18	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.29	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.006	0.68	0.0	0.04	30.22	0.00	2.325	18.25	0.00	3.0	97.0	0.0	1.75	1.56	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PFV	13381	2024-11-18	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.43	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.005	0.66	0.0	0.04	29.78	0.00	2.322	17.09	0.00	2.9	97.1	0.0	1.63	0.66	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7V48	31703	2024-11-14	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.002	0.57	0.0	0.05	14.19	0.00	2.612	3.95	2.65	10.7	89.3	0.0	-4.39	0.40	0.38	0.75	3.62	2598	378	6	0	0	0	0	logfile
✔	7V4A	31705	2024-11-13	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.005	0.62	0.0	0.05	16.59	0.00	2.464	4.12	5.45	12.7	87.3	0.0	-4.26	1.59	0.42	0.83	3.47	1653	240	3	0	0	0	0	logfile
✔	7RTB	24680	2024-11-15	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.004	0.60	0.0	0.04	16.77	0.00	2.334	15.53	3.43	3.5	96.5	0.0	1.41	0.65	0.68	0.83	3.93	8979	1169	7	0	0	1	7	logfile
✔	7V4B	31706	2024-11-14	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.006	0.71	0.0	0.05	17.49	0.00	2.542	9.78	6.25	14.3	85.7	0.0	-4.80	0.59	0.41	0.69	2.43	3336	480	6	0	0	0	0	logfile
✔	7V47	31702	2024-11-13	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.70	0.0	0.06	17.36	0.00	2.589	4.94	5.28	15.8	84.2	0.0	-3.92	0.35	0.43	0.79	5.88	2484	366	6	0	0	0	0	logfile

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