Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V4D	31708	2024-11-13	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.002	0.67	0.0	0.05	12.63	0.00	2.563	4.95	5.00	7.7	92.3	0.0	-3.66	1.16	0.42	0.80	4.18	2376	348	6	0	0	0	0	logfile
✔	7V4C	31707	2024-11-13	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.46	0.00	2.582	4.55	9.09	9.4	90.6	0.0	-4.70	1.15	0.40	0.83	3.46	1287	186	3	0	0	0	0	logfile
✔	7RTB	24680	2024-11-15	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.004	0.60	0.0	0.04	16.77	0.00	2.334	15.53	3.43	3.5	96.5	0.0	1.41	0.65	0.68	0.83	3.93	8979	1169	7	0	0	1	7	logfile
✔	7PF6	13369	2024-11-18	2021-08-11	4.0	4.89	—	3.7	0.006	0.99	0.0	0.06	29.58	0.01	2.268	7.80	0.00	1.9	98.1	0.0	-0.75	0.87	0.76	—	3.7	0.004	0.78	0.0	0.05	29.82	0.00	2.378	18.27	1.59	3.0	97.0	0.0	0.35	2.00	0.87	0.77	—	13470	843	11	334	0	0	0	logfile
✔	7PEW	13359	2024-11-17	2021-08-11	4.6	5.68	—	4.1	0.006	0.91	0.0	0.05	30.19	0.01	2.249	5.53	0.00	1.1	98.9	0.0	-0.20	0.89	0.85	—	4.1	0.005	0.67	0.0	0.04	29.50	0.00	2.311	16.51	0.00	2.0	98.0	0.0	1.72	1.20	0.89	0.86	—	13304	768	10	352	0	0	0	logfile
✔	7PFE	13373	2024-11-18	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.75	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.66	0.0	0.04	29.01	0.00	2.340	13.10	0.00	2.9	97.1	0.0	1.03	1.62	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	7RSQ	24677	2024-11-14	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.39	0.00	2.533	2.26	0.96	3.0	97.0	0.0	2.06	1.76	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7PF5	13368	2024-11-18	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	28.94	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.66	0.0	0.03	28.80	0.00	2.319	15.47	1.01	2.5	97.5	0.0	0.82	1.25	0.87	0.82	0.82	13470	843	11	334	0	0	0	logfile
✔	7RSB	24668	2024-11-14	2021-08-11	3.68	3.73	—	3.7	0.006	1.07	0.0	0.06	15.19	0.01	2.275	4.50	0.75	5.9	94.1	0.0	-5.18	0.68	0.82	1.61	3.7	0.004	0.78	0.0	0.04	16.82	0.00	2.509	11.07	3.60	6.5	93.5	0.0	-0.72	0.57	0.68	0.82	0.94	6630	886	2	0	0	0	0	logfile
✔	7RSH	24670	2024-11-17	2021-08-11	3.0	2.76	—	3.0	0.009	1.43	0.0	0.05	19.07	0.02	2.221	8.11	0.58	8.0	92.0	0.0	-0.72	0.65	0.80	2.41	3.0	0.003	0.65	0.0	0.04	18.04	0.00	2.598	6.08	2.11	6.2	93.8	0.0	1.23	0.42	0.63	0.81	2.44	13744	1604	8	0	60	0	0	logfile
✔	7PFD	13372	2024-11-18	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.94	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.006	0.78	0.0	0.04	31.25	0.01	2.311	23.53	0.00	3.8	96.2	0.0	-0.63	2.58	0.89	0.81	—	13675	843	11	344	0	0	0	logfile
✔	7RSi	24672	2024-11-16	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	5.90	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.5	0.004	0.64	0.0	0.04	12.84	0.00	1.858	11.61	0.00	6.3	93.7	0.0	-0.10	1.20	0.83	0.69	—	10886	686	3	0	2	0	5400	logfile
✔	7PF3	13366	2024-11-18	2021-08-11	4.0	4.81	—	3.6	0.007	0.94	0.0	0.05	29.23	0.01	2.266	6.23	0.14	2.4	97.6	0.0	-0.63	0.91	0.87	—	3.6	0.004	0.69	0.0	0.04	28.82	0.00	2.362	13.36	1.30	2.7	97.3	0.0	1.80	0.59	0.91	0.87	—	13470	843	11	334	0	0	0	logfile
✔	7PFF	13374	2024-11-17	2021-08-11	4.3	7.61	—	3.8	0.006	0.92	0.0	0.05	30.35	0.01	2.286	8.26	0.00	1.6	98.4	0.0	-0.07	0.90	0.79	—	3.7	0.006	0.76	0.0	0.04	31.11	0.01	2.327	26.21	0.00	4.0	96.0	0.0	0.34	1.87	0.90	0.82	—	12935	768	10	334	0	0	0	logfile
✔	7RSL	24674	2024-11-19	2021-08-11	3.45	4.21	—	3.7	0.007	0.82	0.0	0.05	13.62	0.00	2.200	11.16	0.23	4.5	95.5	0.0	-1.76	0.76	0.84	2.18	3.8	0.003	0.72	0.0	0.04	16.08	0.00	2.440	11.65	1.76	3.3	96.7	0.0	0.03	1.08	0.75	0.86	1.93	19150	2350	10	0	0	0	0	logfile
✔	7RSN	24675	2024-11-19	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	13.45	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.004	0.74	0.0	0.05	14.14	0.00	2.506	6.63	2.27	6.3	93.4	0.2	-0.46	3.07	0.71	0.84	2.02	19623	2310	33	0	99	0	0	logfile
✔	7PF4	13367	2024-11-17	2021-08-11	4.0	4.72	—	3.7	0.005	0.89	0.0	0.05	29.72	0.01	2.258	6.44	0.00	2.4	97.6	0.0	-0.80	0.87	0.76	—	3.7	0.007	0.78	0.0	0.04	30.02	0.01	2.446	24.44	2.20	4.3	95.7	0.0	0.43	0.79	0.88	0.80	—	12935	768	10	334	0	0	0	logfile
✔	7V2W	31669	2024-11-20	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.003	0.65	0.0	0.04	17.27	0.00	2.557	4.51	2.03	6.2	93.8	0.0	-1.85	0.62	0.75	0.84	1.39	21619	2655	5	0	0	0	0	logfile
✔	7V2Q	31660	2024-11-19	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	22.99	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.005	0.66	0.0	0.04	23.11	0.01	2.274	7.76	2.72	6.5	93.5	0.0	-0.25	1.47	0.82	0.88	1.97	52904	2875	25	1391	2	0	0	logfile
✔	7RRA	24657	2024-11-15	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.5	0.003	0.60	0.0	0.04	14.42	0.00	2.490	11.90	0.00	3.9	96.1	0.0	1.54	0.61	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile

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