Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K13	36785	2024-11-15	2023-07-10	3.33	3.76	3.47	3.7	0.003	0.58	0.0	0.04	16.51	0.00	2.205	9.59	0.40	2.2	97.8	0.0	0.67	0.62	0.69	1.38	3.7	0.003	0.68	0.0	0.05	17.29	0.00	2.483	10.47	4.14	3.2	96.8	0.0	0.79	2.06	0.58	0.72	1.65	9078	1118	4	0	6	0	0	logfile
✔	8K15	36786	2024-11-15	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile
✔	8K1B	36791	2024-11-14	2023-07-10	3.47	3.90	3.47	3.8	0.005	0.71	0.0	0.05	16.50	0.01	2.357	10.66	0.85	2.8	97.2	0.0	-1.31	0.65	0.71	2.02	3.9	0.003	0.74	0.0	0.05	17.19	0.00	2.470	11.50	4.27	2.6	97.4	0.0	-0.60	2.45	0.59	0.71	1.69	4176	508	4	0	6	0	0	logfile
✔	8PPT	17815	2024-11-19	2023-07-10	2.9	3.15	3.01	3.2	0.003	0.55	0.0	0.04	19.22	0.00	1.950	6.05	2.82	3.8	96.2	0.0	-0.19	0.71	0.84	2.71	3.2	0.003	0.57	0.0	0.04	19.44	0.00	1.943	4.82	2.43	3.8	96.2	0.0	0.21	0.28	0.71	0.86	2.62	19620	2376	9	34	6	0	0	logfile
✔	8K0M	36774	2024-11-15	2023-07-09	3.17	3.37	3.20	3.4	0.003	0.57	0.0	0.04	17.60	0.00	1.975	4.27	0.39	4.0	95.8	0.2	0.17	0.67	0.81	2.08	3.4	0.003	0.55	0.0	0.04	17.83	0.00	1.996	3.58	3.25	4.8	95.1	0.1	0.97	0.25	0.69	0.82	1.52	9641	1186	5	0	6	0	0	logfile
✔	8K0i	36765	2024-11-18	2023-07-09	3.62	4.01	3.62	4.0	0.004	0.64	0.0	0.04	18.38	0.00	2.077	7.64	0.37	4.9	95.0	0.1	0.24	0.73	0.72	1.03	4.0	0.003	0.56	0.0	0.04	17.92	0.00	2.438	5.32	2.49	4.0	95.9	0.1	1.21	0.34	0.72	0.71	0.92	15372	1882	10	0	6	0	0	logfile
✔	8K0F	36763	2024-11-15	2023-07-08	3.37	3.03	3.31	3.4	0.004	0.62	0.0	0.04	18.66	0.00	2.114	4.87	0.00	3.8	96.2	0.1	0.29	0.69	0.80	2.26	3.4	0.002	0.52	0.0	0.04	17.73	0.00	2.158	3.97	2.18	3.5	96.5	0.0	1.53	1.15	0.69	0.77	2.16	9595	1182	5	0	5	0	0	logfile
✔	8K0E	36762	2024-11-15	2023-07-08	3.65	4.35	3.83	4.2	0.004	0.74	0.0	0.04	21.03	0.01	2.098	8.36	0.12	4.2	95.8	0.0	1.22	0.75	0.79	1.50	4.2	0.003	0.66	0.0	0.04	19.05	0.00	2.312	5.65	3.11	3.4	96.6	0.0	1.95	1.15	0.75	0.78	1.60	8300	1008	7	0	9	0	0	logfile
✔	8K0D	36761	2024-11-17	2023-07-08	2.94	3.57	2.96	3.4	0.004	0.63	0.0	0.05	10.65	0.00	2.065	12.63	0.00	4.6	95.3	0.1	-1.60	0.81	0.84	3.56	3.4	0.004	0.68	0.0	0.05	13.58	0.00	2.497	11.18	0.99	4.6	95.4	0.0	-0.96	0.50	0.82	0.87	3.33	13282	1714	6	0	0	0	0	logfile
✔	8K0C	36760	2024-11-18	2023-07-08	3.18	3.97	3.42	3.6	0.008	0.90	0.0	0.06	8.92	0.01	2.007	5.55	0.00	5.7	94.2	0.1	-3.42	0.84	0.80	2.51	3.6	0.003	0.65	0.0	0.05	12.88	0.00	2.461	10.99	1.37	4.9	95.1	0.0	-0.95	1.80	0.84	0.85	2.12	15262	1986	8	0	0	0	0	logfile
✔	8PPR	17814	2024-11-16	2023-07-08	3.0	3.16	3.06	3.3	0.003	0.63	0.0	0.04	14.03	0.00	2.133	12.50	0.00	2.1	97.8	0.1	3.16	0.77	0.74	1.10	3.3	0.006	0.68	0.0	0.04	16.43	0.00	2.401	9.33	1.73	2.9	97.0	0.1	2.69	0.56	0.76	0.76	1.40	11354	1388	9	0	0	1	0	logfile
✔	8K0B	36759	2024-11-14	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	1.8	0.003	0.77	0.0	0.04	17.69	0.00	2.400	11.03	5.43	7.4	92.6	0.0	-0.33	0.43	0.53	0.53	0.45	5689	689	1	0	0	0	0	logfile
✔	8TF2	41217	2024-11-19	2023-07-07	2.57	2.79	2.66	2.8	0.012	1.75	3.0	0.09	15.41	0.01	2.484	4.43	0.38	1.5	98.5	0.0	0.29	0.57	0.85	5.52	2.9	0.003	0.55	0.0	0.04	16.46	0.00	2.318	4.50	1.78	1.4	98.6	0.0	2.01	1.72	0.66	0.89	4.68	19856	2408	8	0	24	0	0	logfile
✔	8PPo	17806	2024-11-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	8TF3	41218	2024-11-19	2023-07-07	2.94	3.18	2.97	3.3	0.012	1.80	4.0	0.09	14.59	0.02	2.356	4.45	0.00	2.7	97.3	0.0	-0.94	0.57	0.83	5.13	3.3	0.004	0.61	0.0	0.04	15.86	0.00	2.537	4.36	1.97	1.5	98.5	0.0	1.98	0.47	0.65	0.87	3.70	19888	2408	8	0	20	0	0	logfile
✔	8TF4	41219	2024-11-19	2023-07-07	2.86	3.17	2.99	3.2	0.012	1.77	0.0	0.09	15.62	0.01	2.302	5.28	0.58	2.0	98.0	0.0	-0.60	0.57	0.85	4.97	3.2	0.002	0.54	0.0	0.04	16.29	0.00	2.493	5.13	0.77	1.3	98.7	0.0	2.31	0.94	0.62	0.87	3.72	19888	2408	8	0	20	0	0	logfile
✔	8PP6	17796	2024-11-17	2023-07-06	3.18	3.69	3.09	3.9	0.005	0.56	0.0	0.03	26.62	0.00	2.263	3.50	0.14	2.1	97.9	0.0	1.64	0.84	0.80	2.51	3.9	0.005	0.66	0.0	0.04	27.11	0.00	2.281	8.11	3.27	3.1	96.9	0.0	2.05	0.62	0.86	0.87	1.92	13318	872	13	312	1	0	0	logfile
✔	8TEQ	41195	2024-11-14	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.004	0.65	0.0	0.05	18.66	0.00	2.567	3.29	2.31	3.9	96.1	0.0	-3.08	0.46	0.65	0.93	6.23	6705	825	30	0	0	0	0	logfile
✔	8PP7	17797	2024-11-18	2023-07-06	2.91	3.46	2.95	3.2	0.004	0.60	0.0	0.04	25.19	0.00	2.222	2.26	0.69	2.9	97.1	0.0	0.98	0.81	0.77	2.20	3.2	0.005	0.60	0.0	0.04	25.96	0.00	2.331	4.84	1.38	2.4	97.6	0.0	1.51	0.53	0.84	0.87	2.29	15562	1165	18	306	8	0	0	logfile
✔	8TEK	41189	2024-11-18	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.76	0.0	0.04	19.15	0.00	2.080	15.31	2.29	3.4	96.5	0.1	0.20	2.29	0.18	0.66	0.55	15250	1817	10	0	0	0	0	logfile

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