Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JZZ	36755	2024-11-15	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.003	0.60	0.0	0.04	15.10	0.00	2.569	8.61	2.28	4.8	95.2	0.0	-0.14	0.98	0.59	0.71	2.03	8680	1198	6	0	0	0	0	logfile
✔	8TEA	41179	2024-11-14	2023-07-05	3.4	2.31	—	2.0	0.004	0.74	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.0	0.002	0.61	0.0	0.04	14.94	0.00	2.306	9.76	1.36	3.4	96.6	0.0	-0.14	0.40	0.71	0.68	2.21	6054	780	7	0	0	0	0	logfile
✔	8TDW	41175	2024-11-16	2023-07-05	3.04	3.24	3.20	3.2	0.005	0.56	0.0	0.05	14.08	0.00	2.217	6.55	0.00	5.6	94.4	0.0	-0.08	0.39	0.50	3.22	3.2	0.006	0.66	0.0	0.05	15.61	0.00	1.983	5.20	3.37	7.2	92.8	0.0	-0.65	0.33	0.55	0.73	2.91	11359	1830	8	12	2	0	0	logfile
✔	8JZB	36741	2024-11-18	2023-07-05	2.76	3.65	2.90	3.2	0.007	1.02	0.0	0.06	19.24	0.01	2.240	6.94	6.93	2.1	97.7	0.1	0.59	0.87	0.91	3.32	3.3	0.003	0.64	0.0	0.05	16.62	0.00	2.384	5.06	1.23	2.8	97.2	0.0	0.55	0.48	0.83	0.86	3.26	16660	2120	12	0	15	0	0	logfile
✔	8PoK	17793	2024-11-15	2023-07-05	3.4	3.50	3.48	3.4	0.007	0.99	4.0	0.06	10.58	0.01	2.115	7.67	0.46	10.5	89.5	0.0	-2.24	0.57	0.78	2.62	3.4	0.003	0.62	0.0	0.04	14.81	0.00	2.431	3.68	3.57	7.7	92.3	0.0	-0.60	0.58	0.62	0.82	1.78	8042	1024	6	0	1	0	0	logfile
✔	8TDV	41174	2024-11-16	2023-07-05	3.44	3.66	3.43	3.6	0.002	0.53	0.0	0.04	14.04	0.00	2.000	6.00	0.53	7.4	92.6	0.0	-0.51	0.53	0.61	1.95	3.6	0.003	0.66	0.0	0.04	16.27	0.00	2.093	7.34	4.09	7.2	92.8	0.0	-0.06	1.35	0.53	0.67	1.41	10957	1740	8	13	2	0	0	logfile
✔	8PoP	17794	2024-11-15	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.003	0.60	0.0	0.03	21.89	0.00	2.436	4.65	2.27	0.1	99.9	0.0	3.98	1.36	0.71	0.83	1.54	8929	953	11	56	0	0	0	logfile
✔	8JZN	36748	2024-11-17	2023-07-05	2.47	2.92	2.74	2.9	0.019	1.12	0.0	0.08	21.23	0.00	1.784	9.87	1.91	4.2	95.8	0.0	-2.06	0.61	0.79	3.69	2.9	0.003	0.60	0.0	0.04	16.57	0.00	2.467	6.52	2.22	3.5	96.5	0.0	1.16	1.55	0.57	0.77	2.95	12831	1489	3	0	20	0	0	logfile
✔	8PoE	17789	2024-11-16	2023-07-04	4.2	4.40	4.17	4.5	0.003	0.64	0.0	0.04	14.20	0.00	2.265	9.34	0.00	2.8	97.2	0.0	1.48	0.57	0.71	—	4.5	0.003	0.62	0.0	0.04	14.46	0.00	2.409	7.36	0.00	3.1	96.8	0.1	1.29	1.16	0.57	0.72	—	10947	1371	3	0	0	0	0	logfile
✔	8PoG	17791	2024-11-14	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8TDo	41172	2024-11-14	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.003	0.52	0.0	0.05	15.07	0.00	2.461	8.36	1.90	6.5	93.5	0.0	-3.54	0.35	0.51	0.84	5.19	2892	372	4	0	0	0	0	logfile
✔	8PoH	17792	2024-11-20	2023-07-04	3.3	3.52	3.34	3.5	0.003	0.56	0.0	0.04	18.79	0.00	2.001	6.79	2.37	3.1	96.9	0.0	0.11	0.69	0.80	2.24	3.5	0.003	0.55	0.0	0.04	18.73	0.00	1.973	4.79	2.59	2.7	97.3	0.0	0.58	0.37	0.77	0.84	2.06	20729	2479	11	38	1	0	0	logfile
✔	8PoC	17788	2024-11-14	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	4.1	0.004	0.65	0.0	0.03	17.70	0.00	2.542	6.69	4.81	2.8	97.2	0.0	2.92	1.43	0.77	0.82	—	4924	616	4	0	0	0	0	logfile
✔	8TDN	41171	2024-11-14	2023-07-04	3.1	3.48	2.78	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.004	0.55	0.0	0.05	15.38	0.00	2.632	7.07	1.01	8.8	91.2	0.0	-3.07	0.37	0.59	0.87	5.31	3620	465	5	0	0	0	0	logfile
✔	8JYS	36730	2024-11-14	2023-07-03	4.5	4.28	3.75	4.3	0.004	0.96	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.3	0.004	0.82	0.0	0.05	13.23	0.01	2.538	15.81	0.27	15.1	83.8	1.2	-3.34	1.19	0.68	0.72	—	3522	441	4	0	0	0	0	logfile
✔	8JY7	36722	2024-11-14	2023-07-03	3.2	2.66	3.25	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.003	0.58	0.0	0.04	14.06	0.00	2.570	7.06	2.20	5.2	94.8	0.0	1.25	1.56	0.65	0.81	2.04	7292	968	4	0	0	0	0	logfile
✔	8JY5	36720	2024-11-16	2023-07-03	4.17	7.05	4.27	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.5	0.003	0.71	0.0	0.04	13.52	0.00	2.338	17.17	0.00	2.9	97.0	0.1	0.46	3.28	0.63	0.81	—	11511	1457	1	0	0	0	0	logfile
✔	8JY8	36723	2024-11-14	2023-07-03	2.45	2.34	2.57	2.4	0.005	0.69	0.0	0.04	17.05	0.01	2.343	7.64	1.65	2.1	97.9	0.0	0.01	0.60	0.75	3.63	2.4	0.003	0.63	0.0	0.04	16.74	0.01	2.469	7.10	2.75	3.2	96.8	0.0	1.74	0.51	0.68	0.81	4.56	7392	968	8	0	4	0	0	logfile
✔	8JYP	36729	2024-11-16	2023-07-03	3.38	4.15	3.49	3.8	0.003	0.62	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.003	0.57	0.0	0.04	13.37	0.00	2.538	4.71	1.00	2.8	97.2	0.0	1.13	1.06	0.84	0.85	2.37	6627	795	7	0	14	0	0	logfile
✔	8PNV	17786	2024-11-17	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile

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