Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T9F	41109	2024-11-17	2023-06-23	2.6	3.21	2.66	3.0	0.004	0.59	0.0	0.04	25.25	0.00	1.469	4.80	0.00	2.1	97.9	0.0	1.11	0.88	0.87	2.94	3.0	0.005	0.57	0.0	0.04	26.30	0.00	2.409	5.21	2.01	2.3	97.7	0.0	1.99	0.50	0.88	0.88	2.49	13132	1031	12	244	1	0	0	logfile
✔	8PJN	17713	2024-11-14	2023-06-23	3.4	3.52	3.41	3.6	0.007	0.73	0.0	0.05	14.18	0.01	1.512	5.43	0.00	5.1	94.9	0.0	1.04	0.78	0.86	2.67	3.6	0.002	0.51	0.0	0.04	15.74	0.00	2.608	3.82	1.74	4.2	95.8	0.0	2.27	0.30	0.78	0.88	2.17	6917	923	6	0	2	0	0	logfile
✔	8PJJ	17711	2024-11-17	2023-06-23	4.24	6.93	4.39	4.4	0.003	0.75	0.0	0.04	17.53	0.00	2.120	19.23	0.72	9.6	90.1	0.3	-1.14	0.91	0.81	—	4.4	0.003	0.75	0.0	0.04	17.28	0.00	2.404	16.29	0.24	8.9	90.5	0.5	-1.21	0.48	0.92	0.83	—	8348	946	3	40	1	0	0	logfile
✔	8T9D	41107	2024-11-18	2023-06-23	4.66	5.67	4.89	4.6	0.003	0.82	0.0	0.04	11.89	0.01	1.248	11.17	0.00	10.2	89.5	0.3	-3.52	0.83	0.72	—	4.6	0.003	0.71	0.0	0.04	11.83	0.00	2.380	8.39	0.00	10.0	89.8	0.2	-1.14	1.32	0.86	0.79	—	49136	7745	26	0	20	0	0	logfile
✔	8T9A	41105	2024-11-16	2023-06-23	3.17	4.41	3.31	3.4	0.011	0.98	0.0	0.06	15.50	0.01	2.029	16.71	0.61	13.8	86.2	0.0	-5.00	0.84	0.74	1.83	3.4	0.003	0.71	0.0	0.05	15.93	0.00	2.521	8.04	1.83	6.2	93.8	0.0	-2.30	2.21	0.88	0.77	1.63	11785	1498	3	0	0	0	0	logfile
✔	8JU0	36658	2024-11-14	2023-06-23	2.98	3.34	2.92	3.3	0.006	0.81	0.0	0.06	13.41	0.00	2.221	8.35	0.00	1.6	98.4	0.0	1.57	0.52	0.73	2.11	3.3	0.003	0.56	0.0	0.04	14.19	0.00	2.620	6.93	1.60	1.6	98.4	0.0	1.93	0.28	0.49	0.72	2.12	3199	431	2	0	1	0	0	logfile
✔	8PJP	17718	2024-11-13	2023-06-23	2.92	3.55	2.87	3.4	0.003	0.53	0.0	0.04	15.92	0.00	2.365	2.11	1.34	2.5	97.5	0.0	0.81	0.38	0.90	2.83	3.4	0.003	0.68	0.0	0.04	16.82	0.00	2.466	4.22	3.12	2.5	97.5	0.0	0.76	1.35	0.34	0.91	3.70	2157	286	3	0	2	0	0	logfile
✔	8JTX	36655	2024-11-14	2023-06-22	3.28	3.65	3.31	3.6	0.003	0.70	0.0	0.04	15.90	0.00	2.297	2.73	0.46	3.9	96.1	0.0	-1.20	0.56	0.78	1.80	3.6	0.002	0.57	0.0	0.04	16.24	0.00	2.548	2.14	2.78	3.6	96.4	0.0	-0.29	0.32	0.62	0.81	1.91	4253	566	2	0	0	0	0	logfile
✔	8JTS	36651	2024-11-14	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.21	0.00	2.481	9.82	0.00	5.3	94.7	0.0	1.16	1.14	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8JTV	36653	2024-11-14	2023-06-22	3.77	4.24	3.67	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.68	0.0	0.04	15.06	0.00	2.639	9.10	2.89	4.9	95.1	0.0	1.14	0.37	0.50	0.65	0.67	3067	437	2	0	1	0	0	logfile
✔	8JTT	36652	2024-11-14	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.68	0.0	0.04	15.58	0.00	2.623	8.28	2.46	4.0	96.0	0.0	0.21	1.16	0.52	0.60	-0.31	3321	454	2	0	1	0	0	logfile
✔	8JTW	36654	2024-11-14	2023-06-22	3.23	3.56	3.23	3.6	0.002	0.56	0.0	0.04	13.05	0.00	2.309	2.70	0.00	4.3	95.7	0.0	0.14	0.57	0.76	1.88	3.6	0.003	0.57	0.0	0.04	14.65	0.00	2.589	3.17	0.91	5.4	94.6	0.0	0.60	0.29	0.55	0.77	1.57	4282	566	2	0	0	0	0	logfile
✔	8JTZ	36657	2024-11-14	2023-06-22	3.27	3.79	3.41	3.7	0.006	0.90	0.0	0.06	15.42	0.01	2.239	10.05	0.25	3.2	96.8	0.0	-1.05	0.52	0.74	1.46	3.7	0.003	0.59	0.0	0.04	15.96	0.00	2.563	8.04	4.43	3.0	97.0	0.0	1.40	0.35	0.53	0.75	1.37	3999	530	2	0	1	0	0	logfile
✔	8T8F	41098	2024-11-17	2023-06-22	4.8	5.11	4.71	4.7	0.003	0.75	1.0	0.05	13.37	0.00	2.201	18.73	0.14	7.3	92.7	0.0	-1.53	0.76	0.63	—	4.7	0.003	0.68	0.0	0.04	13.96	0.00	2.404	11.34	0.07	6.9	93.1	0.0	-0.38	1.27	0.77	0.66	—	13050	1623	5	0	0	0	0	logfile
✔	8JTY	36656	2024-11-14	2023-06-22	3.26	3.60	3.26	3.6	0.003	0.55	0.0	0.04	16.26	0.00	2.217	4.12	0.00	5.0	95.0	0.0	-0.56	0.57	0.78	1.67	3.6	0.003	0.58	0.0	0.04	16.43	0.00	2.349	2.59	2.50	4.8	95.2	0.0	-0.29	0.22	0.53	0.76	1.69	4274	566	2	0	0	0	0	logfile
✔	8T8M	41099	2024-11-17	2023-06-22	3.0	3.51	—	3.4	0.003	0.56	0.0	0.04	14.01	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.006	0.68	0.0	0.05	15.75	0.00	2.441	5.47	1.82	5.0	95.0	0.0	0.41	0.28	0.82	0.86	2.78	13146	1770	6	0	2	0	0	logfile
✔	8PiV	17692	2024-11-19	2023-06-22	3.46	3.80	3.35	3.5	0.017	1.48	5.0	0.10	15.86	0.01	2.127	4.62	1.59	3.6	96.0	0.4	-0.16	0.54	0.51	2.31	3.6	0.003	0.70	0.0	0.04	15.45	0.00	2.368	8.71	2.13	2.2	97.6	0.2	2.05	1.67	0.69	0.84	1.71	18089	2293	21	0	16	6	0	logfile
✔	8T8E	41097	2024-11-15	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.004	0.64	0.0	0.04	17.60	0.00	2.533	9.02	2.87	8.6	91.4	0.0	-2.33	0.37	0.73	0.79	1.21	8755	1085	3	0	0	0	0	logfile
✔	8JT9	36637	2024-11-14	2023-06-21	2.97	1.96	2.94	3.3	0.007	0.76	0.0	0.04	15.91	0.01	2.246	5.16	0.67	0.8	99.2	0.0	2.28	0.56	0.88	2.70	3.3	0.004	0.75	0.0	0.04	16.09	0.01	2.597	6.36	2.68	1.6	98.4	0.0	2.20	0.89	0.55	0.88	2.55	2872	384	2	0	1	0	0	logfile
✔	8JTD	36641	2024-11-18	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.006	1.01	0.0	0.06	12.93	0.01	2.269	26.10	0.00	6.7	93.3	0.0	-1.21	0.69	0.68	0.65	—	17275	1978	51	0	128	0	0	logfile

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