Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BSU	44872	2024-12-29	2024-05-13	3.36	3.84	3.35	3.7	0.004	0.78	0.0	0.06	17.46	0.01	2.093	8.78	0.19	6.0	93.7	0.2	-1.72	0.85	0.83	2.90	3.7	0.004	0.67	0.0	0.04	14.75	0.00	2.300	5.91	1.12	6.0	93.8	0.2	-0.69	1.20	0.82	0.85	2.62	10225	1287	8	0	16	0	0	logfile
✔	8ZHN	60109	2024-12-28	2024-05-11	4.12	4.26	4.04	3.8	0.003	0.65	0.0	0.05	12.78	0.01	2.211	6.61	0.66	4.0	96.0	0.0	-1.31	0.71	0.65	—	3.9	0.006	0.79	0.0	0.05	12.69	0.01	2.317	15.74	0.00	7.3	92.7	0.0	-1.29	1.68	0.75	0.77	—	45273	5829	30	0	57	0	0	logfile
✔	9BRQ	44840	2024-12-31	2024-05-11	4.3	4.97	4.53	4.4	0.004	0.83	0.0	0.05	13.74	0.01	2.339	3.94	0.15	5.5	94.4	0.1	-0.58	0.72	0.77	—	4.5	0.003	0.71	0.0	0.04	13.95	0.00	2.313	12.97	0.01	4.5	95.4	0.0	0.31	0.58	0.73	0.82	—	67167	8590	33	0	0	0	0	logfile
✔	9BRS	44842	2024-12-31	2024-05-11	4.4	3.80	4.47	4.0	0.005	0.81	1.0	0.05	12.95	0.01	2.234	3.89	0.09	5.9	94.0	0.1	-0.74	0.47	0.56	—	4.0	0.003	0.70	0.0	0.04	13.61	0.00	2.320	12.94	0.03	4.8	95.2	0.0	0.31	0.67	0.51	0.66	—	65548	8388	32	0	0	0	0	logfile
✔	8ZHL	60107	2024-12-26	2024-05-11	3.96	4.12	3.87	3.8	0.003	0.59	0.0	0.05	14.27	0.00	2.091	6.22	0.73	3.7	96.3	0.0	-1.18	0.74	0.75	1.18	3.8	0.002	0.59	0.0	0.04	14.84	0.00	2.481	8.83	2.06	4.2	95.8	0.0	-0.61	0.76	0.75	0.78	1.18	38776	4950	26	0	57	0	0	logfile
✔	9BRA	44839	2024-12-31	2024-05-11	4.3	4.67	4.38	4.3	0.005	0.81	1.0	0.05	13.34	0.01	2.297	4.23	0.10	5.2	94.8	0.0	-0.52	0.70	0.71	—	4.3	0.003	0.70	0.0	0.04	13.73	0.00	2.331	13.66	0.01	4.4	95.6	0.0	0.60	1.26	0.72	0.80	—	66852	8554	33	0	0	0	0	logfile
✔	8ZHM	60108	2024-12-28	2024-05-11	3.39	3.86	3.40	3.4	0.003	0.57	0.0	0.05	14.34	0.00	2.181	6.31	0.80	3.7	96.3	0.0	-1.04	0.81	0.75	1.35	3.5	0.003	0.59	0.0	0.04	14.84	0.00	2.484	9.09	2.48	4.2	95.7	0.1	-0.57	0.65	0.83	0.80	1.52	45273	5829	30	0	57	0	0	logfile
✔	8ZHo	60110	2024-12-30	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.003	0.61	0.0	0.04	15.76	0.00	2.429	7.83	3.28	4.9	95.1	0.0	-0.07	1.13	0.68	0.64	1.83	11423	1498	6	0	1	0	0	logfile
✔	9BRR	44841	2024-12-31	2024-05-11	4.5	3.78	4.55	4.0	0.005	0.84	3.0	0.05	12.84	0.01	2.279	3.84	0.42	5.0	94.7	0.4	0.03	0.48	0.67	—	3.9	0.003	0.70	0.0	0.04	13.72	0.00	2.233	11.24	0.06	5.1	94.9	0.1	0.37	1.32	0.49	0.68	—	65594	8393	32	0	0	0	0	logfile
✔	9BRT	44843	2024-12-31	2024-05-11	4.3	4.74	4.42	4.4	0.004	0.73	0.0	0.04	12.08	0.01	2.370	2.43	0.01	4.9	95.1	0.0	-0.02	0.71	0.73	—	4.4	0.003	0.63	0.0	0.04	12.90	0.00	2.355	9.74	0.00	3.6	96.3	0.0	1.26	1.21	0.73	0.80	—	66930	8563	33	0	0	0	0	logfile
✔	9BRU	44844	2024-12-31	2024-05-11	4.4	3.70	4.47	4.1	0.004	0.77	0.0	0.04	12.90	0.01	2.222	2.88	0.04	5.2	94.7	0.1	-0.37	0.43	0.53	—	4.1	0.003	0.66	0.0	0.04	13.64	0.00	2.358	9.71	0.04	4.2	95.7	0.0	0.56	0.65	0.47	0.63	—	65548	8388	32	0	0	0	0	logfile
✔	9FAC	50272	2024-12-28	2024-05-10	3.9	3.38	3.90	4.3	0.007	1.17	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.005	1.18	1.0	0.05	15.32	0.01	2.431	14.20	2.68	9.2	90.8	0.0	-4.40	1.96	0.48	0.66	1.70	8595	585	10	0	5	0	4190	logfile
✔	9FAB	50271	2024-12-28	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.7	0.003	0.68	0.0	0.05	14.74	0.00	2.507	6.81	2.68	9.4	90.6	0.0	-5.27	1.34	0.45	0.70	2.06	8595	585	10	0	5	0	4190	logfile
✔	8ZHE	60100	2024-12-26	2024-05-10	3.16	3.71	3.15	3.4	0.003	0.64	0.0	0.05	15.44	0.00	1.931	6.01	0.72	4.2	95.8	0.0	-1.05	0.80	0.71	0.95	3.4	0.005	0.79	1.0	0.05	15.44	0.00	2.274	8.33	2.78	5.8	94.2	0.0	-0.79	0.88	0.85	0.84	1.97	35541	4503	27	0	60	0	0	logfile
✔	8ZH8	60096	2024-12-29	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.80	0.0	0.04	16.31	0.00	2.441	13.40	2.30	3.7	96.3	0.0	0.51	0.97	0.70	0.76	0.76	10048	1316	8	0	1	0	0	logfile
✔	9FAA	50270	2024-12-28	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	8ZHG	60102	2024-12-27	2024-05-10	3.51	3.69	3.44	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.002	0.60	0.0	0.04	17.36	0.00	2.563	6.18	4.99	4.3	95.7	0.0	-0.90	1.97	0.64	0.77	1.26	3326	425	4	0	2	0	0	logfile
✔	8ZGT	60090	2024-12-28	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.61	0.0	0.05	17.25	0.00	2.442	3.48	2.83	4.6	95.3	0.1	1.01	0.32	0.63	0.80	2.90	8915	1077	13	0	14	0	0	logfile
✔	8ZGS	60089	2024-12-28	2024-05-09	3.04	3.27	3.08	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.004	0.58	0.0	0.04	17.12	0.00	2.434	3.42	3.94	4.3	95.7	0.0	1.36	0.33	0.65	0.82	2.69	8915	1077	13	0	14	0	0	logfile
✔	9F9P	50258	2024-12-27	2024-05-08	2.25	2.07	2.32	2.2	0.012	1.73	18.0	0.09	16.33	0.02	1.949	2.09	4.39	2.6	97.0	0.4	-1.54	0.83	0.89	6.00	2.1	0.003	0.65	0.0	0.05	16.78	0.00	2.536	2.64	1.35	1.8	98.1	0.0	1.47	0.84	0.80	0.87	5.13	49596	6272	56	0	0	1074	0	logfile

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