Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ERE	19913	2024-12-31	2024-03-22	2.82	3.01	2.84	3.0	0.005	0.64	0.0	0.04	17.12	0.01	1.903	5.42	0.61	2.7	97.3	0.0	0.59	0.72	0.83	3.79	3.0	0.004	0.58	0.0	0.04	17.99	0.01	1.988	6.50	1.15	2.3	97.7	0.0	0.86	0.43	0.72	0.84	3.29	14541	1654	7	56	9	0	0	logfile
✔	9B5N	44218	2024-12-29	2024-03-22	3.12	3.59	3.17	3.5	0.003	0.47	0.0	0.04	9.09	0.00	2.000	2.16	0.66	2.5	97.2	0.3	1.07	0.79	0.84	2.92	3.5	0.003	0.56	0.0	0.04	13.08	0.00	1.966	4.17	2.17	2.3	97.7	0.1	1.25	1.64	0.74	0.81	2.28	9527	1207	5	0	4	0	0	logfile
✔	9B5i	44213	2024-12-29	2024-03-22	2.7	3.19	2.75	3.0	0.003	0.49	0.0	0.04	9.58	0.00	1.989	1.16	0.85	1.8	98.2	0.0	1.34	0.68	0.77	4.07	3.0	0.003	0.48	0.0	0.04	13.10	0.00	1.993	3.00	1.51	1.5	98.5	0.0	1.47	1.10	0.67	0.78	3.54	9536	1209	7	0	5	0	0	logfile
✔	9B58	44203	2024-12-27	2024-03-22	3.39	3.89	3.38	3.8	0.003	0.45	0.0	0.04	10.33	0.00	1.812	3.00	1.10	4.2	95.8	0.0	0.81	0.81	0.81	2.15	3.8	0.004	0.62	0.0	0.04	13.59	0.00	2.455	6.71	1.84	3.9	96.1	0.0	0.57	0.59	0.85	0.85	1.54	4871	599	4	0	1	0	0	logfile
✔	9B59	44204	2024-12-27	2024-03-22	3.49	3.95	3.48	3.8	0.003	0.43	0.0	0.04	9.73	0.00	1.779	1.86	0.74	3.4	96.6	0.0	1.74	0.82	0.79	1.99	3.8	0.004	0.57	0.0	0.04	13.24	0.00	2.429	5.58	1.66	3.7	96.3	0.0	1.28	0.61	0.83	0.83	1.67	4871	599	4	0	1	0	0	logfile
✔	9B5L	44216	2024-12-29	2024-03-22	3.3	4.02	3.61	3.8	0.004	0.49	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.55	0.0	0.04	13.99	0.00	2.441	5.05	1.33	2.4	97.6	0.0	1.34	1.64	0.82	0.84	2.04	10117	1283	6	0	2	0	0	logfile
✔	9B5C	44207	2024-12-29	2024-03-22	2.5	3.00	2.51	2.8	0.003	0.48	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.49	0.0	0.04	13.42	0.00	2.027	3.06	1.32	1.2	98.8	0.0	1.70	0.26	0.72	0.82	3.53	9536	1209	6	0	4	0	0	logfile
✔	9B5V	44226	2024-12-29	2024-03-22	3.94	4.39	4.04	4.0	0.003	0.51	0.0	0.04	9.57	0.00	1.969	4.32	2.36	1.8	98.0	0.2	1.41	0.86	0.81	1.55	4.0	0.002	0.65	0.0	0.04	12.65	0.00	1.902	6.80	1.41	2.1	97.9	0.0	1.58	1.34	0.87	0.84	1.42	9527	1207	5	0	4	0	0	logfile
✔	9B5J	44214	2024-12-29	2024-03-22	2.86	3.33	2.88	3.2	0.004	0.46	0.0	0.04	9.89	0.00	2.161	1.53	1.04	2.9	97.1	0.0	1.00	0.68	0.78	3.39	3.2	0.002	0.51	0.0	0.04	13.71	0.00	2.453	3.32	0.94	1.7	98.3	0.0	1.30	1.11	0.67	0.78	2.76	9525	1209	6	0	2	0	0	logfile
✔	8YRG	39542	2024-12-28	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.003	0.62	0.0	0.04	14.96	0.00	2.562	6.08	2.29	4.2	95.8	0.0	0.71	0.94	0.74	0.76	2.96	7977	1079	6	0	1	0	0	logfile
✔	8YRJ	39543	2024-12-27	2024-03-21	3.87	4.13	3.94	4.1	0.003	0.54	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.85	0.0	0.05	16.95	0.00	2.499	12.82	3.24	4.5	94.6	0.9	0.82	1.66	0.54	0.73	1.27	3748	454	7	0	9	0	0	logfile
✔	9B3T	44155	2024-12-31	2024-03-20	3.53	4.31	3.67	4.1	0.003	0.62	0.0	0.04	18.61	0.00	2.215	11.95	2.81	3.3	96.7	0.0	0.30	0.83	0.76	1.34	4.1	0.003	0.75	0.0	0.04	18.54	0.00	2.337	11.19	3.30	3.2	96.8	0.0	2.13	1.50	0.84	0.82	1.05	16389	2049	8	0	0	0	0	logfile
✔	9B4F	44179	2024-12-27	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.032	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.52	0.0	0.04	14.26	0.00	2.565	4.12	2.52	7.1	92.9	0.0	1.27	0.84	0.51	0.78	3.02	5612	670	4	0	2	0	0	logfile
✔	8YQX	39509	2024-12-27	2024-03-20	2.97	3.17	3.00	3.2	0.003	0.52	0.0	0.04	16.27	0.00	2.198	8.03	0.72	3.7	96.3	0.0	-0.18	0.56	0.85	2.68	3.2	0.003	0.55	0.0	0.04	16.97	0.00	2.326	6.67	2.17	3.4	96.6	0.0	0.22	0.87	0.55	0.86	2.23	6167	766	3	0	0	0	0	logfile
✔	9B3i	44141	2024-12-31	2024-03-19	2.88	3.47	—	3.0	0.006	0.78	0.0	0.05	13.83	0.00	1.769	10.80	0.30	1.8	98.2	0.0	0.61	0.82	0.73	2.51	3.1	0.004	0.86	0.0	0.04	15.95	0.00	1.852	13.37	1.43	1.6	98.4	0.0	0.97	1.02	0.81	0.79	2.03	14951	1854	7	0	2	0	0	logfile
✔	9B3K	44143	2024-12-27	2024-03-19	2.56	2.75	2.56	2.9	0.004	0.59	0.0	0.04	17.05	0.00	2.195	8.40	4.35	3.6	96.4	0.0	1.63	0.69	0.85	2.99	2.9	0.003	0.57	0.0	0.04	16.88	0.00	2.543	7.17	3.15	3.2	96.8	0.0	2.03	0.20	0.68	0.87	2.82	6063	797	3	0	0	0	0	logfile
✔	8YQQ	39502	2024-12-27	2024-03-19	3.95	2.96	3.87	3.4	0.008	1.28	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.003	0.71	0.0	0.05	15.59	0.00	2.017	7.39	2.97	6.2	93.8	0.0	-1.41	0.96	0.87	0.83	2.52	5141	649	4	0	6	0	0	logfile
✔	9EPR	19884	2024-12-28	2024-03-19	4.9	4.87	4.71	4.7	0.004	0.93	0.0	0.05	17.43	0.01	2.296	13.12	14.42	7.8	91.8	0.5	-3.94	0.67	0.73	—	4.7	0.003	0.75	0.0	0.05	12.75	0.00	2.409	13.05	0.00	5.6	94.4	0.0	-0.90	2.93	0.66	0.72	—	7046	890	5	0	1	0	0	logfile
✔	9B3o	44147	2024-12-27	2024-03-19	3.18	3.36	3.13	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.295	10.17	0.00	2.5	97.5	0.0	2.11	0.61	0.85	1.52	3.3	0.004	0.62	0.0	0.04	16.83	0.00	2.531	8.83	2.81	1.7	98.3	0.0	2.68	0.27	0.61	0.86	1.58	2630	363	1	0	0	0	0	logfile
✔	9B3L	44144	2024-12-27	2024-03-19	3.25	3.40	3.16	3.4	0.003	0.54	0.0	0.04	15.96	0.00	2.274	9.17	0.40	2.6	97.4	0.0	2.14	0.61	0.84	1.47	3.4	0.003	0.67	0.0	0.04	16.24	0.00	2.552	9.36	4.74	1.7	98.3	0.0	2.44	0.42	0.60	0.84	1.64	2623	358	1	0	0	0	0	logfile

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