Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPK	26058	2024-12-27	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.003	0.60	0.0	0.04	14.85	0.00	2.540	2.12	1.44	3.1	96.9	0.0	-0.87	1.23	0.64	0.80	3.09	1484	194	2	0	1	0	0	logfile
✔	7QWL	14188	2024-12-27	2022-01-25	3.47	3.11	2.99	3.5	0.012	2.27	14.0	0.13	13.78	0.01	2.501	3.69	1.06	11.3	88.2	0.5	-3.35	0.45	0.81	5.36	3.5	0.003	0.73	0.0	0.05	16.41	0.00	2.586	9.52	3.17	7.0	93.0	0.0	-3.11	3.78	0.36	0.79	4.53	3258	405	3	0	0	0	0	logfile
✔	7WQ3	32698	2024-12-28	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	9.42	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.60	0.0	0.04	15.18	0.00	2.563	4.83	3.14	2.2	97.8	0.0	1.18	1.87	0.64	0.82	3.01	9209	1160	7	0	5	0	0	logfile
✔	7WPZ	32693	2024-12-27	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	11.15	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.003	0.58	0.0	0.04	12.81	0.00	2.509	3.08	1.49	2.6	97.4	0.0	1.77	1.38	0.78	0.79	2.06	5756	787	8	0	15	0	0	logfile
✔	7WQ4	32699	2024-12-28	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.52	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.41	0.00	2.545	4.46	2.36	1.9	98.1	0.0	1.32	1.25	0.64	0.83	3.50	8290	1048	7	0	2	0	0	logfile
✔	7WPo	32686	2024-12-27	2022-01-24	3.5	3.78	—	3.7	0.014	1.64	6.0	0.11	11.40	0.01	2.359	5.22	0.48	2.6	97.3	0.1	-0.13	0.70	0.79	3.06	3.7	0.003	0.62	0.0	0.04	13.68	0.00	2.393	4.99	1.13	1.6	98.4	0.0	2.24	1.77	0.68	0.83	2.53	6829	867	8	0	17	0	0	logfile
✔	7ToE	26030	2024-12-31	2022-01-24	3.0	3.29	—	3.3	0.003	0.59	0.0	0.04	14.04	0.00	2.201	8.94	0.12	3.9	96.0	0.1	-0.13	0.72	0.83	3.59	3.3	0.005	0.85	1.0	0.04	17.05	0.00	2.013	8.87	2.27	3.9	96.0	0.1	-0.33	0.48	0.73	0.87	3.43	15100	1868	4	0	0	0	0	logfile
✔	7ToF	26031	2024-12-28	2022-01-24	3.7	3.97	—	4.0	0.003	0.60	0.0	0.04	15.20	0.01	2.163	16.14	0.12	4.4	95.6	0.0	-0.60	0.67	0.64	1.86	4.0	0.003	0.71	0.0	0.05	17.50	0.00	2.495	16.47	2.68	5.1	94.9	0.0	-0.76	0.62	0.69	0.66	0.98	7588	938	2	0	0	0	0	logfile
✔	7WPC	32682	2024-12-28	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	17.02	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.005	0.68	0.0	0.05	17.26	0.00	1.882	8.07	1.62	4.5	95.5	0.0	-0.94	1.32	0.75	0.81	3.00	8057	980	6	0	9	0	0	logfile
✔	7WP6	32676	2024-12-27	2022-01-23	3.81	4.11	—	4.1	0.008	1.07	0.0	0.06	14.82	0.01	2.224	7.27	0.69	9.4	90.4	0.1	-3.82	0.70	0.79	2.25	4.1	0.005	0.80	0.0	0.04	16.68	0.00	2.522	12.20	4.66	8.3	91.6	0.1	-1.92	1.32	0.70	0.79	1.68	6748	861	9	0	3	0	0	logfile
✔	7WP8	32678	2024-12-27	2022-01-23	3.88	4.14	—	4.1	0.008	1.01	2.0	0.11	14.51	0.01	2.250	7.91	0.00	9.0	90.9	0.1	-4.12	0.69	0.80	2.68	4.0	0.003	0.75	0.0	0.05	16.21	0.00	2.523	11.75	2.19	7.1	92.9	0.0	-2.92	2.40	0.70	0.79	2.52	6797	861	9	0	3	0	0	logfile
✔	7WPB	32681	2024-12-27	2022-01-23	2.79	2.94	—	2.9	0.005	0.74	0.0	0.05	15.21	0.01	2.101	3.78	0.29	3.0	97.0	0.0	-4.67	0.68	0.86	4.00	2.9	0.004	0.66	0.0	0.05	16.80	0.00	1.947	6.78	1.72	3.0	97.0	0.0	-0.08	0.47	0.71	0.88	3.86	6491	793	3	0	5	0	0	logfile
✔	7To0	26025	2024-12-27	2022-01-22	3.5	3.68	—	3.7	0.011	1.17	0.0	0.07	16.44	0.00	2.288	8.07	0.82	7.5	92.5	0.0	-3.00	0.72	0.81	2.21	3.7	0.003	0.57	0.0	0.04	17.80	0.00	2.564	8.24	3.12	8.4	91.6	0.0	-0.39	0.54	0.74	0.82	2.48	5989	682	4	24	1	0	0	logfile
✔	7To3	26028	2024-12-31	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	12.12	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.59	0.0	0.04	14.25	0.00	1.083	3.34	0.58	2.1	97.9	0.0	1.10	1.33	0.82	0.85	3.75	14764	1850	6	0	10	0	0	logfile
✔	7Woo	32653	2024-12-31	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.004	0.85	0.0	0.05	16.60	0.00	2.288	13.79	2.94	8.8	90.9	0.3	-0.71	1.63	0.47	0.44	0.21	66949	8644	12	0	0	0	0	logfile
✔	7To2	26027	2024-12-27	2022-01-22	3.2	3.55	—	3.5	0.011	1.13	0.0	0.07	15.50	0.00	2.284	5.58	0.84	5.0	95.0	0.0	-1.96	0.80	0.85	2.46	3.5	0.002	0.53	0.0	0.04	17.06	0.00	2.332	6.17	1.51	4.8	95.2	0.0	0.52	0.37	0.77	0.84	2.53	6052	670	3	30	3	0	0	logfile
✔	7TNX	26022	2024-12-27	2022-01-22	3.54	3.76	—	3.8	0.011	1.08	0.0	0.06	15.46	0.00	2.247	6.37	0.17	7.7	92.2	0.2	-2.75	0.70	0.80	2.39	3.8	0.003	0.61	0.0	0.04	17.16	0.00	2.503	6.28	3.77	7.7	92.3	0.0	-0.04	0.47	0.66	0.78	2.59	5753	647	4	23	2	0	0	logfile
✔	7TNZ	26024	2024-12-27	2022-01-22	3.54	3.70	—	3.7	0.011	1.17	0.0	0.07	15.33	0.00	2.258	8.16	0.66	6.8	92.8	0.4	-2.66	0.71	0.81	2.02	3.7	0.003	0.58	0.0	0.04	17.41	0.00	2.523	7.39	2.47	7.2	92.8	0.0	-0.45	1.20	0.72	0.80	1.58	5986	680	4	23	2	0	0	logfile
✔	7WoP	32654	2024-12-27	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.80	0.0	0.05	15.16	0.01	2.431	16.01	6.86	16.8	83.2	0.0	-3.71	1.29	0.64	0.68	2.15	5107	669	3	0	0	0	0	logfile
✔	7QVi	14178	2024-12-29	2022-01-21	3.0	3.27	—	3.3	0.005	0.73	0.0	0.04	14.80	0.00	1.960	9.67	0.00	3.3	96.7	0.0	-1.28	0.72	0.88	4.43	3.3	0.003	0.62	1.0	0.04	16.50	0.00	1.968	8.03	1.15	2.7	97.3	0.0	0.88	0.37	0.73	0.89	3.38	56600	7128	32	0	32	0	0	logfile

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