Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WN0	32618	2024-12-27	2022-01-17	3.64	3.82	—	3.7	0.003	0.57	0.0	0.04	16.82	0.01	2.273	9.34	0.47	3.3	96.7	0.0	1.10	0.58	0.82	1.51	3.7	0.003	0.63	0.0	0.04	17.00	0.00	2.522	9.21	3.73	3.7	96.3	0.0	1.33	1.90	0.68	0.86	1.36	3879	494	2	0	0	0	0	logfile
✔	7QUD	14148	2024-12-27	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.004	0.67	0.0	0.05	18.60	0.01	1.963	10.64	3.34	3.7	96.3	0.0	0.03	0.44	0.67	0.78	2.17	6696	844	4	0	3	0	0	logfile
✔	7WN1	32619	2024-12-27	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	16.09	0.00	2.464	6.63	3.26	4.3	95.7	0.0	1.89	0.35	0.65	0.89	3.12	3901	493	3	0	1	0	0	logfile
✔	7WMM	32615	2024-12-27	2022-01-15	2.6	2.33	—	2.7	0.008	0.86	0.0	0.05	12.79	0.00	2.361	6.18	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.003	0.81	0.0	0.05	15.93	0.00	2.526	4.69	0.00	6.2	93.8	0.0	-2.25	0.46	0.52	0.89	5.62	2618	366	8	0	2	0	0	logfile
✔	7WM2	32598	2024-12-31	2022-01-14	2.69	2.86	—	3.0	0.012	1.03	12.0	0.07	18.17	0.01	2.110	18.30	12.04	5.9	94.0	0.2	-4.24	0.49	0.72	2.14	3.0	0.003	0.68	0.0	0.04	17.94	0.00	2.472	6.71	3.46	2.5	97.5	0.0	0.41	1.26	0.60	0.82	2.45	15485	1878	8	0	7	0	0	logfile
✔	7WM1	32597	2024-12-31	2022-01-14	2.8	2.99	—	3.1	0.012	1.25	34.0	0.08	20.14	0.01	2.080	15.92	15.89	6.6	93.4	0.0	-4.36	0.65	0.80	2.43	3.1	0.004	0.68	0.0	0.04	18.31	0.00	2.481	6.83	3.79	4.4	95.5	0.1	-0.56	3.93	0.56	0.78	2.41	15197	1844	8	0	7	0	0	logfile
✔	7TJ8	25919	2024-12-29	2022-01-14	3.2	3.59	—	3.5	0.015	1.03	2.0	0.06	17.59	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.005	0.72	0.0	0.04	16.95	0.00	2.429	3.86	1.25	4.9	95.0	0.1	0.76	1.32	0.57	0.87	2.79	10551	1242	4	0	18	0	0	logfile
✔	7QTK	14143	2024-12-27	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.72	0.0	0.05	14.71	0.00	2.505	8.22	1.62	4.4	95.4	0.2	-0.47	0.56	0.62	0.79	1.84	5009	643	4	0	2	0	0	logfile
✔	7TJ9	25920	2024-12-30	2022-01-14	2.9	3.19	—	3.1	0.016	1.01	0.0	0.05	20.67	0.01	2.167	6.06	0.09	5.0	95.0	0.0	0.12	0.56	0.82	2.67	3.1	0.003	0.58	0.0	0.04	17.34	0.00	2.494	4.71	2.78	2.6	97.4	0.0	2.04	1.24	0.53	0.82	2.12	10975	1273	5	0	24	0	0	logfile
✔	7QTJ	14142	2024-12-29	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.003	0.68	0.0	0.05	13.19	0.00	2.448	7.62	0.00	4.8	95.0	0.2	-0.79	0.50	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7WM0	32596	2024-12-27	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.81	0.0	0.05	16.21	0.00	2.592	12.10	4.96	6.4	93.6	0.0	-1.59	2.05	0.76	0.67	0.79	3376	432	4	0	1	0	0	logfile
✔	7WLR	32591	2024-12-29	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.01	0.00	2.165	6.90	1.41	1.2	98.8	0.0	3.29	1.20	0.77	0.82	2.12	11922	754	10	290	0	0	0	logfile
✔	7TiK	25912	2024-12-27	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.46	0.0	0.04	16.50	0.00	2.625	6.00	1.01	0.6	99.4	0.0	5.69	0.38	0.78	0.80	1.44	2565	339	6	0	0	0	0	logfile
✔	7WLi	32584	2024-12-29	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	15.40	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.003	0.68	0.0	0.04	15.66	0.00	2.296	11.79	1.39	5.2	94.8	0.0	0.68	0.50	0.58	0.78	1.72	9493	1135	2	0	21	0	0	logfile
✔	7WLL	32587	2024-12-29	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	16.94	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.85	0.0	0.06	16.86	0.00	2.351	10.46	1.49	5.4	94.6	0.0	0.85	1.18	0.59	0.80	1.35	9540	1135	2	0	21	0	0	logfile
✔	7WLJ	32585	2024-12-29	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	16.92	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.004	0.87	0.0	0.05	15.82	0.00	2.321	15.05	1.99	5.9	94.1	0.0	-0.02	1.25	0.60	0.80	1.01	9450	1135	2	0	15	0	0	logfile
✔	7WLC	32581	2024-12-27	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.82	0.0	0.05	16.16	0.00	2.515	15.16	2.79	6.8	93.2	0.0	-1.46	0.51	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7WLE	32583	2024-12-29	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.4	0.005	1.02	0.0	0.05	14.86	0.00	2.354	16.21	3.65	5.2	94.8	0.0	-0.81	0.93	0.80	0.78	1.38	10188	1324	2	0	0	0	0	logfile
✔	7WLK	32586	2024-12-29	2022-01-13	3.6	3.50	—	3.6	0.010	0.99	0.0	0.06	15.42	0.00	1.853	14.07	0.10	6.7	93.3	0.0	0.27	0.72	0.79	1.77	3.6	0.004	0.69	0.0	0.04	15.77	0.00	2.334	9.38	2.58	4.8	95.2	0.0	0.97	1.17	0.72	0.79	1.38	9461	1135	2	0	17	0	0	logfile
✔	7WL2	32574	2024-12-29	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.68	0.0	0.04	14.75	0.00	2.433	9.58	4.19	6.4	93.6	0.1	-0.07	0.59	0.80	0.81	2.34	10198	1330	2	0	0	0	0	logfile

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