Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WLB	32580	2024-12-29	2022-01-12	4.1	3.63	—	3.5	0.002	0.44	0.0	0.04	8.68	0.00	2.205	6.88	3.92	4.5	95.5	0.0	-4.05	0.74	0.72	—	3.5	0.003	0.71	0.0	0.04	11.17	0.00	2.457	12.80	0.00	6.0	94.0	0.0	-0.78	1.45	0.75	0.75	—	10193	1327	2	0	0	0	0	logfile
✔	7QRU	14124	2024-12-31	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.73	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.62	0.0	0.04	15.64	0.00	2.516	4.99	1.43	1.0	99.0	0.0	2.35	1.13	0.79	0.90	4.00	16100	1957	18	0	3	360	0	logfile
✔	7WL2	32574	2024-12-29	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.68	0.0	0.04	14.75	0.00	2.433	9.58	4.19	6.4	93.6	0.1	-0.07	0.59	0.80	0.81	2.34	10198	1330	2	0	0	0	0	logfile
✔	7WL9	32578	2024-12-29	2022-01-12	3.78	3.44	—	3.5	0.002	0.49	0.0	0.04	9.09	0.00	2.201	6.64	4.27	4.6	95.3	0.1	-4.11	0.78	0.74	1.09	3.6	0.003	0.80	0.0	0.04	14.11	0.00	2.423	12.70	3.92	6.7	93.3	0.0	-0.43	0.83	0.78	0.77	1.30	10194	1327	3	0	1	0	0	logfile
✔	7WLA	32579	2024-12-29	2022-01-12	3.76	3.09	3.72	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.2	0.006	1.03	1.0	0.05	14.01	0.00	2.157	18.53	4.45	6.8	93.1	0.1	-0.93	1.36	0.72	0.71	0.82	10193	1327	2	0	0	0	0	logfile
✔	7WL7	32576	2024-12-29	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.82	0.0	0.04	14.02	0.00	2.455	14.83	4.01	6.3	93.7	0.0	-0.05	0.84	0.79	0.79	1.92	10198	1330	2	0	0	0	0	logfile
✔	7WKW	32570	2024-12-30	2022-01-11	2.62	2.71	—	2.8	0.004	0.57	0.0	0.04	13.10	0.00	1.991	5.89	0.00	1.9	98.1	0.0	1.70	0.47	0.63	1.09	2.7	0.003	0.56	0.0	0.04	15.60	0.01	2.459	3.73	0.94	2.4	97.6	0.0	1.82	0.63	0.60	0.82	2.10	12056	754	4	0	2	0	6138	logfile
✔	7THE	25893	2024-12-27	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.76	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.74	0.0	0.04	16.28	0.01	2.488	12.81	5.26	6.2	93.8	0.0	-1.12	0.68	0.68	0.76	2.68	3305	423	4	0	1	0	0	logfile
✔	7QQK	14122	2024-12-30	2022-01-09	3.8	4.08	3.83	4.0	0.004	0.81	0.0	0.05	13.77	0.01	2.117	25.98	0.00	5.2	94.5	0.2	-0.09	0.65	0.78	1.88	4.0	0.005	0.97	1.0	0.05	16.12	0.01	2.229	24.15	2.80	6.5	93.4	0.1	-0.57	0.50	0.65	0.79	1.66	13444	1732	8	12	0	0	0	logfile
✔	7WK6	32560	2024-12-27	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.005	0.86	0.0	0.05	17.98	0.00	2.162	13.62	2.73	3.2	96.7	0.1	-1.14	1.37	0.79	0.79	1.90	6428	791	2	0	0	0	0	logfile
✔	7WK1	32555	2024-12-29	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.61	0.0	0.04	13.48	0.00	2.445	9.72	3.21	5.9	94.0	0.1	0.04	0.79	0.70	0.84	1.54	10200	1330	4	0	2	0	0	logfile
✔	7WK7	32561	2024-12-29	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.003	0.76	0.0	0.04	15.05	0.00	2.425	11.16	3.92	5.4	94.6	0.0	-0.31	0.73	0.78	0.79	1.95	10206	1330	4	0	2	0	0	logfile
✔	7WK8	32562	2024-12-27	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.004	0.64	0.0	0.04	13.10	0.00	2.584	6.99	2.66	3.5	96.3	0.2	0.34	1.23	0.80	0.79	4.25	3982	516	4	0	0	0	0	logfile
✔	7WJN	32546	2024-12-30	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.44	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.003	0.56	0.0	0.04	14.07	0.00	2.490	4.32	2.67	5.2	94.8	0.0	1.97	1.16	0.68	0.85	1.81	13054	1616	4	0	4	0	0	logfile
✔	7WJU	32548	2024-12-28	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.9	0.004	0.62	0.0	0.04	22.32	0.00	2.259	4.79	1.88	4.5	95.5	0.0	0.51	1.16	0.70	0.84	3.33	8322	607	5	158	0	0	0	logfile
✔	7TFS	25879	2024-12-29	2022-01-07	4.3	4.40	—	4.4	0.004	0.96	0.0	0.04	16.80	0.01	2.001	35.40	0.00	6.0	94.0	0.0	-2.06	0.63	0.70	—	4.4	0.008	1.25	0.0	0.05	16.37	0.01	2.259	13.24	0.00	12.0	88.0	0.0	-2.04	0.63	0.65	0.75	—	11382	1414	14	0	28	0	0	logfile
✔	7WJo	32547	2024-12-30	2022-01-07	3.2	3.40	—	3.3	0.006	0.55	0.0	0.04	11.70	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.54	0.0	0.04	14.81	0.00	2.526	4.06	2.39	5.4	94.6	0.0	1.61	0.52	0.67	0.84	1.46	12932	1602	4	0	2	0	0	logfile
✔	7WJM	32545	2024-12-30	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.55	0.0	0.04	14.22	0.00	2.527	3.49	2.81	4.5	95.4	0.1	2.21	3.22	0.71	0.87	1.93	12970	1614	2	0	0	0	0	logfile
✔	7TF9	25866	2024-12-28	2022-01-06	2.61	2.92	—	3.0	0.005	0.68	0.0	0.05	15.76	0.00	1.872	9.56	3.66	4.1	95.9	0.0	0.50	0.45	0.67	3.27	2.9	0.002	0.49	0.0	0.04	16.73	0.00	1.925	16.29	1.30	4.0	96.0	0.0	0.74	0.52	0.70	0.87	3.98	49868	6286	42	0	28	0	140	logfile
✔	7TF4	25861	2024-12-30	2022-01-06	3.01	3.49	—	3.3	0.005	0.85	0.0	0.05	12.76	0.01	2.278	3.59	0.00	2.8	97.2	0.0	-1.60	0.63	0.82	3.29	3.3	0.005	0.58	0.0	0.05	13.88	0.00	2.454	5.94	1.08	3.0	97.0	0.0	-0.64	0.42	0.64	0.84	3.12	12792	1608	12	0	12	0	0	logfile

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