Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QPA	14116	2024-12-29	2022-01-03	3.18	3.43	3.17	3.5	0.004	0.64	0.0	0.04	15.17	0.01	2.208	8.98	0.00	2.2	97.8	0.0	1.43	0.55	0.74	1.92	3.5	0.003	0.54	0.0	0.04	15.89	0.01	2.420	9.35	1.08	2.9	97.1	0.0	1.06	1.36	0.51	0.74	1.49	10814	654	6	0	4	64	5540	logfile
✔	7WiJ	32531	2024-12-30	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.58	0.00	2.626	3.20	1.66	0.6	99.4	0.0	3.52	0.28	0.71	0.87	1.45	12396	1602	6	0	0	0	0	logfile
✔	7QPC	14117	2024-12-29	2022-01-03	3.44	3.64	3.38	3.7	0.004	0.62	0.0	0.04	15.00	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.57	0.0	0.04	15.63	0.00	2.373	6.95	0.18	3.1	96.9	0.0	1.56	0.30	0.58	0.80	1.11	10830	654	6	0	4	62	5540	logfile
✔	7WiH	32530	2024-12-29	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.024	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.71	0.0	0.04	14.83	0.00	2.604	4.15	3.41	10.6	89.4	0.0	-3.22	0.48	0.75	0.77	1.72	10002	1482	4	0	4	0	0	logfile
✔	7QP9	14115	2024-12-29	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.003	0.52	0.0	0.04	16.56	0.00	2.420	9.80	0.90	3.6	96.4	0.0	1.88	0.73	0.53	0.82	3.66	11087	654	6	0	4	127	5668	logfile
✔	7WiG	32529	2024-12-28	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.58	0.0	0.04	15.29	0.00	2.518	4.61	1.43	2.0	98.0	0.0	1.47	0.34	0.79	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7WiC	32528	2024-12-28	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.59	0.00	2.584	5.76	2.72	3.2	96.8	0.0	1.28	0.37	0.78	0.80	3.06	9048	1158	6	0	0	0	0	logfile
✔	7Wi8	32527	2024-12-29	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.66	0.0	0.04	12.20	0.00	2.586	7.14	0.00	10.1	89.9	0.0	-2.79	1.53	0.68	0.76	—	9268	1446	4	0	4	0	0	logfile
✔	7Wi0	32517	2024-12-27	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.76	0.0	0.04	16.32	0.00	2.422	8.30	3.49	8.1	91.9	0.0	-2.24	1.84	0.70	0.81	1.87	6823	886	8	0	1	0	0	logfile
✔	7WHZ	32516	2024-12-27	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.21	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	3.7	0.003	0.64	0.0	0.04	15.89	0.00	2.519	7.13	3.63	6.0	94.0	0.0	-1.93	0.52	0.67	0.84	2.66	6810	887	8	0	1	0	0	logfile
✔	7WHV	32512	2024-12-30	2021-12-31	2.8	2.22	—	2.7	0.016	1.29	0.0	0.08	12.09	0.01	2.100	7.72	0.60	7.0	92.9	0.1	-3.98	0.65	0.78	4.48	2.7	0.004	0.70	0.0	0.04	15.33	0.00	2.004	10.40	2.79	5.4	94.6	0.0	-0.67	0.63	0.65	0.79	3.54	12331	1520	4	0	7	0	0	logfile
✔	7WHW	32513	2024-12-30	2021-12-31	3.1	2.64	—	3.0	0.009	1.17	0.0	0.07	12.72	0.01	2.107	7.84	0.54	8.4	91.6	0.1	-5.16	0.62	0.76	3.64	3.0	0.004	0.68	0.0	0.04	14.96	0.00	1.978	10.40	2.40	7.2	92.8	0.0	-1.94	0.65	0.63	0.80	3.00	11978	1488	4	0	5	0	0	logfile
✔	7WHN	32505	2024-12-28	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.24	0.00	2.536	4.82	1.15	2.1	97.9	0.0	0.93	0.37	0.37	0.81	2.44	9284	1170	1	0	0	0	0	logfile
✔	7WH8	32497	2024-12-27	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.006	0.77	0.0	0.05	15.91	0.00	2.533	5.83	2.94	8.6	91.4	0.0	-1.34	1.19	0.70	0.82	3.68	5479	715	3	0	0	0	0	logfile
✔	7TD6	25824	2024-12-27	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.85	0.0	0.05	18.67	0.00	2.411	10.89	3.36	8.1	91.9	0.0	-3.99	1.32	0.42	0.76	3.89	5575	690	5	0	0	0	0	logfile
✔	7WGE	32484	2024-12-28	2021-12-28	3.4	3.56	—	3.6	0.003	0.63	0.0	0.04	15.02	0.01	2.182	11.60	0.28	6.8	93.1	0.1	-0.43	0.62	0.65	1.29	3.6	0.003	0.72	0.0	0.04	17.01	0.00	2.012	8.61	1.67	7.1	92.7	0.1	-0.48	1.48	0.66	0.72	1.73	6460	804	3	0	2	0	0	logfile
✔	7WGC	32483	2024-12-27	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.64	0.0	0.04	16.12	0.00	2.555	8.15	1.00	3.9	96.1	0.0	0.00	0.35	0.56	0.55	0.95	6527	795	4	0	5	0	0	logfile
✔	7WGR	32485	2024-12-30	2021-12-28	2.92	3.14	—	3.2	0.007	0.99	3.0	0.06	14.82	0.01	1.877	5.78	0.54	4.6	95.1	0.4	-0.28	0.69	0.78	2.90	3.2	0.003	0.59	0.0	0.04	16.87	0.00	1.985	5.82	1.75	3.1	96.9	0.1	0.26	0.47	0.69	0.82	2.87	13614	1700	4	0	6	0	0	logfile
✔	7TCP	25816	2024-12-31	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.005	0.56	0.0	0.04	13.07	0.00	2.214	4.68	2.73	4.0	96.0	0.0	2.25	0.27	0.71	0.83	2.45	14992	1912	12	0	12	0	0	logfile
✔	7WFG	32465	2024-12-29	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.76	1.0	0.05	12.82	0.00	2.434	13.29	0.36	10.3	89.6	0.1	-2.27	1.03	0.70	0.74	—	9836	1246	11	0	125	0	0	logfile

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