Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V8B	31796	2024-12-27	2021-08-22	3.2	3.85	—	3.6	0.003	0.59	0.0	0.04	15.61	0.00	2.308	6.16	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.003	0.59	0.0	0.04	15.60	0.00	2.425	4.31	1.00	5.3	94.6	0.1	0.30	1.16	0.79	0.88	2.30	6650	797	9	0	14	0	0	logfile
✔	7RXB	24727	2024-12-28	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.004	0.59	0.0	0.04	15.08	0.00	2.595	1.32	1.26	4.6	95.4	0.0	-0.16	0.26	0.64	0.89	3.21	8506	1096	4	0	8	0	0	logfile
✔	7RXD	24729	2024-12-28	2021-08-22	3.6	3.31	—	3.7	0.003	0.58	0.0	0.04	13.84	0.01	2.138	9.41	0.21	2.6	97.4	0.0	0.47	0.69	0.75	2.16	3.7	0.003	0.61	0.0	0.04	15.62	0.00	2.539	8.34	1.97	3.1	96.9	0.0	0.66	0.39	0.69	0.75	1.74	9007	1148	6	0	2	0	0	logfile
✔	7RX4	24724	2024-12-30	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.004	0.57	0.0	0.04	16.57	0.00	2.577	4.75	3.97	0.0	100.0	0.0	5.73	0.46	0.62	0.81	0.94	13560	1740	60	0	0	0	0	logfile
✔	7V7i	31772	2024-12-28	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.003	0.57	0.0	0.04	14.32	0.00	2.437	4.71	1.32	4.6	95.3	0.1	-0.18	0.33	0.86	0.87	1.92	51072	6228	84	0	174	0	0	logfile
✔	7V7H	31771	2024-12-28	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.005	0.66	1.0	0.05	14.25	0.00	2.141	5.55	0.83	3.7	96.3	0.1	-0.10	0.32	0.85	0.84	1.79	50949	6209	84	0	174	0	0	logfile
✔	7RX2	24722	2024-12-29	2021-08-21	2.7	2.29	—	2.7	0.010	1.08	0.0	0.05	18.46	0.00	2.196	11.76	0.19	5.6	94.4	0.0	-4.48	0.66	0.86	4.53	2.8	0.003	0.54	0.0	0.04	17.47	0.00	2.175	16.68	2.36	4.7	95.3	0.0	1.84	0.85	0.66	0.87	3.59	10390	1230	6	0	18	6	12	logfile
✔	7V7J	31773	2024-12-28	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	14.70	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.60	0.0	0.04	14.18	0.00	2.380	6.27	1.05	5.2	94.7	0.1	-0.35	0.32	0.87	0.87	1.77	51072	6228	84	0	174	0	0	logfile
✔	7RX5	24725	2024-12-28	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	7RX3	24723	2024-12-29	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	22.83	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.003	0.58	0.0	0.04	18.20	0.00	2.434	5.16	2.17	5.7	94.3	0.0	1.07	0.46	0.73	0.86	2.27	10130	1182	4	0	16	0	0	logfile
✔	7V69	31739	2024-12-29	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.004	0.66	0.0	0.04	15.16	0.00	2.469	11.80	2.91	4.3	95.7	0.0	-1.07	0.44	0.70	0.69	2.00	8539	1122	5	0	0	0	0	logfile
✔	7PiM	13442	2024-12-30	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7V6A	31740	2024-12-29	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.003	0.71	0.0	0.04	16.53	0.00	2.497	11.27	4.90	4.0	96.0	0.0	-1.06	0.46	0.71	0.69	2.05	8584	1122	6	0	1	0	0	logfile
✔	7V68	31738	2024-12-29	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.84	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	2.1	0.004	0.75	0.0	0.05	15.80	0.00	2.519	14.64	3.69	3.8	96.2	0.0	-0.18	0.48	0.72	0.72	1.38	8577	1122	6	0	2	0	0	logfile
✔	7V6Z	31754	2024-12-28	2021-08-20	3.64	3.89	—	3.9	0.012	1.67	6.0	0.11	14.34	0.01	2.282	9.81	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	3.8	0.005	0.79	0.0	0.04	15.11	0.01	2.360	12.47	5.38	3.7	96.2	0.1	0.59	0.74	0.64	0.73	1.45	7082	1008	3	0	6	0	0	logfile
✔	7V6Y	31753	2024-12-28	2021-08-20	3.5	3.75	—	3.8	0.014	1.85	9.0	0.13	16.47	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.68	0.0	0.04	15.62	0.01	2.342	7.83	4.40	4.6	95.4	0.0	0.83	1.19	0.62	0.76	2.06	7484	990	3	0	8	0	0	logfile
✔	7RWJ	24717	2024-12-29	2021-08-20	3.5	3.71	—	3.7	0.008	1.17	4.0	0.07	16.67	0.01	2.258	9.32	1.35	5.1	94.6	0.3	-3.76	0.78	0.80	2.26	3.7	0.003	0.61	0.0	0.04	16.09	0.00	2.338	5.52	1.64	4.5	95.5	0.0	1.06	0.46	0.77	0.80	1.93	9906	1212	4	0	8	0	0	logfile
✔	7V6B	31741	2024-12-30	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.60	0.0	0.04	16.01	0.00	2.512	7.21	2.57	2.5	97.5	0.0	0.78	2.25	0.68	0.79	2.18	13633	1678	2	0	0	0	0	logfile
✔	7PiK	13439	2024-12-31	2021-08-20	2.68	2.96	2.75	2.9	0.003	0.61	0.0	0.04	19.28	0.00	2.284	3.33	0.08	2.9	97.1	0.0	0.06	0.73	0.79	3.31	2.9	0.003	0.61	0.0	0.04	20.99	0.01	2.063	2.92	1.20	3.0	97.0	0.0	0.41	0.32	0.73	0.83	2.80	15475	1624	7	126	0	0	0	logfile
✔	7V6C	31742	2024-12-31	2021-08-20	3.3	2.45	3.20	3.3	0.012	1.56	1.0	0.09	15.17	0.01	2.230	6.10	3.90	3.5	96.5	0.0	-0.64	0.64	0.76	2.40	3.2	0.003	0.58	0.0	0.04	16.63	0.00	2.565	7.24	2.11	2.8	97.2	0.0	1.06	1.84	0.70	0.78	2.29	15643	1800	6	54	0	0	0	logfile

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