Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F4F	31449	2024-12-28	2021-06-18	2.9	3.43	—	3.2	0.010	1.09	0.0	0.06	12.60	0.01	2.164	4.69	0.00	3.9	96.1	0.0	-0.89	0.73	0.82	3.96	3.2	0.004	0.74	0.0	0.04	15.43	0.00	2.342	9.56	1.46	2.2	97.8	0.0	1.26	1.31	0.71	0.85	3.19	8881	1138	8	0	2	0	0	logfile
✔	7N9Q	24259	2024-12-27	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7N9Y	24264	2024-12-28	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7F46	31444	2024-12-27	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.13	0.01	2.467	14.19	0.00	6.1	93.9	0.0	-1.59	1.12	0.79	0.64	—	6564	842	6	0	2	0	0	logfile
✔	7N98	24252	2024-12-27	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.65	0.0	0.04	16.83	0.00	2.625	5.81	1.88	7.0	93.0	0.0	0.17	0.50	0.49	0.80	1.11	3625	473	1	0	0	0	0	logfile
✔	7F3U	31441	2024-12-27	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.003	0.87	0.0	0.04	15.51	0.00	2.494	12.49	6.94	6.6	93.4	0.0	3.37	1.28	0.59	0.77	—	4274	656	2	0	0	0	0	logfile
✔	7oW8	13095	2024-12-31	2021-06-17	3.5	3.84	3.56	3.8	0.011	1.61	24.0	0.10	17.12	0.01	1.983	10.45	4.22	6.3	93.6	0.2	-3.90	0.60	0.74	1.82	3.9	0.004	0.66	0.0	0.04	18.01	0.00	1.916	7.87	3.19	4.3	95.6	0.1	0.60	0.61	0.64	0.77	1.37	8942	1154	4	0	4	0	0	logfile
✔	7N9A	24253	2024-12-27	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.66	0.0	0.04	15.05	0.00	2.302	11.34	3.49	3.2	96.8	0.0	-0.79	0.52	0.73	0.70	2.49	2431	312	2	0	0	0	0	logfile
✔	7F3Q	31434	2024-12-28	2021-06-16	3.3	3.52	—	3.4	0.006	0.81	0.0	0.06	13.82	0.01	1.848	10.11	2.14	5.6	94.3	0.1	-0.94	0.81	0.84	3.49	3.4	0.004	0.66	0.0	0.04	15.50	0.00	2.344	5.85	2.82	4.6	95.4	0.0	-0.13	1.13	0.83	0.90	3.59	8003	1050	7	0	2	0	0	logfile
✔	7N95	24250	2024-12-28	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7N8X	24248	2024-12-27	2021-06-16	3.4	3.65	—	3.6	0.003	0.73	0.0	0.05	13.27	0.01	2.153	9.30	0.00	10.1	89.3	0.6	-1.42	0.64	0.67	2.57	3.6	0.003	0.70	0.0	0.05	16.22	0.01	2.295	8.31	2.12	8.2	91.3	0.5	-1.31	0.47	0.66	0.70	2.02	6617	831	2	0	0	0	0	logfile
✔	7N8N	24238	2024-12-29	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	27.93	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.77	0.0	0.04	28.55	0.01	2.408	16.54	2.01	4.8	94.9	0.3	-0.77	1.28	0.87	0.79	-0.05	11121	798	6	250	0	0	0	logfile
✔	7N8P	24241	2024-12-27	2021-06-15	3.42	3.72	—	3.7	0.005	0.89	0.0	0.05	14.42	0.01	2.276	4.27	0.29	5.9	94.1	0.0	-5.50	0.73	0.80	1.99	3.7	0.003	0.62	0.0	0.04	15.48	0.00	2.568	7.01	1.77	4.6	95.4	0.0	-0.38	0.38	0.69	0.84	1.03	6758	900	2	0	0	0	0	logfile
✔	7oVT	13089	2024-12-27	2021-06-15	2.69	2.94	2.42	2.8	0.017	1.67	0.0	0.10	13.71	0.01	2.550	2.09	0.00	3.0	97.0	0.0	-3.46	0.53	0.82	6.84	2.8	0.010	0.73	0.0	0.05	17.83	0.00	2.565	5.31	3.12	8.1	91.9	0.0	-3.96	0.49	0.57	0.86	6.37	6588	828	12	0	0	0	0	logfile
✔	7N8i	24237	2024-12-27	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.23	0.0	0.07	10.64	0.01	2.309	0.71	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.005	0.62	0.0	0.05	14.31	0.00	2.603	3.12	1.80	2.1	97.9	0.0	1.01	1.28	0.73	0.90	5.43	3600	445	4	0	5	0	0	logfile
✔	7N88	24233	2024-12-29	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.005	0.91	1.0	0.05	16.88	0.01	1.934	15.13	3.66	12.9	87.0	0.1	-3.52	0.53	0.72	0.70	1.36	9402	1220	3	0	4	0	0	logfile
✔	7oU2	13073	2024-12-29	2021-06-11	4.8	4.23	—	2.6	0.013	1.80	4.0	0.12	14.07	0.01	2.465	5.22	0.09	1.3	98.7	0.0	1.53	0.85	0.64	—	2.3	0.004	0.81	0.0	0.04	14.33	0.01	2.422	21.97	0.00	2.9	97.1	0.0	0.08	1.64	0.89	0.72	—	10798	1371	4	0	2	0	0	logfile
✔	7F2o	31429	2024-12-28	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.004	0.70	0.0	0.05	16.00	0.00	2.413	12.43	2.95	2.5	97.5	0.0	0.56	0.65	0.75	0.77	2.78	9004	1150	6	0	0	0	0	logfile
✔	7oU0	13071	2024-12-29	2021-06-10	3.8	3.58	—	3.7	0.013	1.77	0.0	0.11	15.37	0.01	1.798	4.10	0.09	1.5	98.5	0.0	2.70	0.81	0.81	1.19	3.8	0.003	0.71	0.0	0.04	17.54	0.00	1.927	8.97	2.95	2.6	97.3	0.1	1.50	2.12	0.82	0.83	1.73	10335	1313	4	0	6	0	0	logfile
✔	7oTo	13063	2024-12-29	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.3	0.003	0.64	0.0	0.04	17.42	0.00	1.959	7.33	1.94	1.9	98.0	0.1	1.51	0.71	0.80	0.78	1.71	10333	1313	4	0	4	0	0	logfile

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