Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oSH	13051	2024-12-30	2021-06-08	3.8	4.13	—	3.9	0.008	1.09	1.0	0.06	14.37	0.01	1.971	5.11	0.60	6.6	93.4	0.0	-5.50	0.79	0.85	1.76	3.8	0.003	0.67	0.0	0.04	15.33	0.00	1.952	9.13	1.41	5.7	94.3	0.0	-0.17	0.57	0.79	0.85	1.21	12826	1665	9	0	3	1	0	logfile
✔	7oSG	13050	2024-12-30	2021-06-08	3.3	3.90	—	3.5	0.008	1.07	0.0	0.06	14.45	0.01	1.962	4.64	0.97	6.1	93.9	0.0	-5.46	0.81	0.85	2.24	3.6	0.005	0.68	0.0	0.04	15.56	0.00	1.883	7.70	1.79	5.6	94.4	0.0	-0.27	0.56	0.81	0.86	1.43	12831	1666	9	0	3	1	0	logfile
✔	7oSi	13052	2024-12-30	2021-06-08	3.8	4.18	—	3.8	0.010	1.21	1.0	0.07	14.63	0.01	1.948	4.80	1.12	6.3	93.7	0.1	-5.48	0.81	0.84	1.80	3.8	0.004	0.73	0.0	0.04	15.71	0.00	1.976	8.98	2.61	6.0	94.0	0.0	-0.29	0.63	0.81	0.85	1.19	12826	1665	9	0	3	1	0	logfile
✔	7F0T	31404	2024-12-29	2021-06-07	3.1	3.75	—	3.7	0.010	1.02	2.0	0.06	14.29	0.01	2.065	13.17	0.57	5.2	94.8	0.0	-2.51	0.58	0.74	2.44	3.8	0.003	0.62	0.0	0.04	16.21	0.00	2.477	8.07	4.08	1.8	98.2	0.0	0.86	1.20	0.56	0.72	1.70	8164	1033	6	0	1	0	0	logfile
✔	7oS1	13045	2024-12-31	2021-06-07	3.3	3.92	—	3.6	0.005	0.60	0.0	0.04	12.08	0.00	2.229	10.23	0.96	2.8	97.2	0.0	0.53	0.90	0.86	2.53	3.6	0.003	0.63	0.0	0.04	14.65	0.00	2.489	8.39	1.41	2.8	97.2	0.0	0.87	1.33	0.89	0.86	2.35	14054	1746	2	0	0	0	0	logfile
✔	7oS2	13046	2024-12-31	2021-06-07	2.76	3.34	—	3.1	0.005	0.56	0.0	0.04	12.08	0.00	2.209	7.96	0.93	2.2	97.8	0.0	0.65	0.90	0.89	4.03	3.1	0.003	0.61	0.0	0.04	14.66	0.00	2.472	6.39	1.36	2.1	97.9	0.0	0.99	0.49	0.90	0.90	3.31	16485	2046	3	0	0	0	0	logfile
✔	7N64	24193	2024-12-28	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.98	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.81	0.0	0.05	13.84	0.01	2.403	14.60	0.00	11.6	88.4	0.0	-2.75	1.01	0.63	0.68	—	7189	906	7	0	7	0	0	logfile
✔	7oRN	13043	2024-12-31	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	14.14	0.00	1.978	4.09	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.50	0.0	0.04	16.31	0.00	1.968	4.33	1.08	2.3	97.7	0.0	1.60	0.37	0.78	0.91	3.94	14811	1700	6	35	3	92	0	logfile
✔	7N5A	24184	2024-12-29	2021-06-05	3.95	4.30	3.92	4.1	0.003	0.61	0.0	0.04	14.01	0.00	2.045	11.83	0.20	2.1	97.9	0.0	0.92	0.69	0.77	0.50	4.1	0.005	0.77	0.0	0.05	15.84	0.00	1.814	15.37	1.41	3.7	96.3	0.0	0.93	0.42	0.70	0.78	0.52	9254	1178	4	0	6	0	0	logfile
✔	7N58	24182	2024-12-28	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile
✔	7N5B	24185	2024-12-28	2021-06-05	3.8	4.41	3.97	4.3	0.002	0.48	0.0	0.04	14.24	0.00	1.903	6.38	0.20	2.3	97.7	0.0	2.06	0.70	0.77	1.53	4.3	0.002	0.56	0.0	0.04	16.35	0.00	1.995	6.22	1.12	2.6	97.4	0.0	2.91	0.44	0.65	0.78	2.18	9122	1160	4	0	6	0	0	logfile
✔	7N59	24183	2024-12-28	2021-06-05	3.6	4.16	3.74	4.1	0.004	0.62	0.0	0.04	14.74	0.00	2.221	7.04	0.10	2.1	97.9	0.0	1.69	0.69	0.81	1.10	4.1	0.003	0.52	0.0	0.04	16.25	0.00	2.517	6.02	1.20	2.2	97.8	0.0	2.48	0.36	0.69	0.81	0.62	9238	1180	3	0	1	0	0	logfile
✔	7N5F	24188	2024-12-27	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.39	0.00	2.571	6.26	4.13	1.6	98.4	0.0	2.74	0.79	0.36	0.77	2.56	3037	386	2	0	1	0	0	logfile
✔	7N4V	24179	2024-12-31	2021-06-04	3.58	3.85	—	3.8	0.014	1.78	0.0	0.20	16.54	0.01	2.288	6.17	0.12	7.8	92.2	0.0	-3.22	0.56	0.74	1.31	3.8	0.003	0.63	0.0	0.04	15.11	0.00	2.436	6.33	2.03	4.2	95.8	0.0	0.36	0.50	0.68	0.82	1.26	15390	1906	10	0	28	0	0	logfile
✔	7oQZ	13035	2024-12-28	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	14.99	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.78	0.0	0.04	17.77	0.00	2.311	10.98	4.08	2.9	97.1	0.0	3.86	0.75	0.62	0.81	2.33	7996	948	8	0	16	0	0	logfile
✔	7N4X	24180	2024-12-28	2021-06-04	3.33	3.49	—	3.5	0.014	1.76	0.0	0.21	15.86	0.01	2.134	5.53	1.23	7.5	92.5	0.0	-3.15	0.52	0.76	2.75	3.5	0.003	0.58	0.0	0.04	14.99	0.00	2.542	4.55	1.97	3.7	96.3	0.0	0.62	0.39	0.70	0.87	2.19	7647	953	5	0	13	0	0	logfile
✔	7F0J	31399	2024-12-30	2021-06-04	2.9	2.91	2.89	2.9	0.002	0.54	0.0	0.04	13.59	0.01	2.281	9.77	0.00	6.3	93.7	0.0	0.67	0.59	0.73	1.26	3.0	0.003	0.61	0.0	0.04	17.05	0.01	2.526	8.24	2.03	5.1	94.9	0.0	0.92	0.60	0.61	0.79	1.38	12424	1544	8	0	4	0	0	logfile
✔	7N4U	24178	2024-12-31	2021-06-04	3.34	3.91	—	3.8	0.014	1.80	0.0	0.29	17.76	0.01	2.102	4.84	1.79	5.3	94.5	0.2	-2.74	0.58	0.74	1.92	3.8	0.003	0.60	0.0	0.04	15.07	0.00	2.433	5.16	2.90	3.4	96.6	0.0	0.99	0.97	0.66	0.83	2.01	15396	1906	10	0	28	0	0	logfile
✔	7N4T	24177	2024-12-30	2021-06-04	2.4	3.03	2.47	2.8	0.004	0.90	1.0	0.05	18.22	0.00	2.198	7.06	0.14	6.0	94.0	0.0	0.31	0.81	0.86	4.16	2.8	0.003	0.63	0.0	0.04	18.71	0.00	2.466	5.48	1.30	5.3	94.7	0.0	0.54	1.57	0.75	0.85	3.39	12887	1603	14	0	7	0	0	logfile
✔	7F02	31394	2024-12-28	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.42	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.003	0.72	0.0	0.04	16.19	0.00	1.953	7.22	2.84	7.5	92.4	0.1	-0.40	0.40	0.65	0.83	2.32	8835	1130	9	0	5	0	0	logfile

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