Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F03	31395	2024-12-28	2021-06-03	3.29	3.68	—	3.6	0.005	0.75	0.0	0.04	15.39	0.01	1.885	10.01	0.11	5.2	94.8	0.0	-0.34	0.70	0.84	2.85	3.5	0.004	0.69	0.0	0.04	16.14	0.00	1.947	8.85	3.27	6.3	93.6	0.1	0.78	0.96	0.68	0.86	2.60	8891	1130	11	0	5	4	0	logfile
✔	7F02	31394	2024-12-28	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.42	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.003	0.72	0.0	0.04	16.19	0.00	1.953	7.22	2.84	7.5	92.4	0.1	-0.40	0.40	0.65	0.83	2.32	8835	1130	9	0	5	0	0	logfile
✔	7EZV	31391	2024-12-27	2021-06-02	3.3	3.71	—	3.5	0.005	0.71	0.0	0.05	13.54	0.01	2.034	14.66	0.75	8.4	91.3	0.3	-0.96	0.74	0.85	3.03	3.5	0.004	0.69	0.0	0.05	15.37	0.00	2.429	10.94	1.68	7.4	92.4	0.2	-0.70	0.43	0.74	0.86	3.36	4937	632	5	0	0	0	0	logfile
✔	7EZH	31387	2024-12-28	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.67	0.0	0.04	15.56	0.00	2.439	10.06	2.75	2.1	97.9	0.0	0.80	0.66	0.75	0.76	2.19	8838	1150	6	0	0	0	0	logfile
✔	7N3P	24143	2024-12-28	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	24.55	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.003	0.60	0.0	0.03	24.56	0.00	2.230	11.36	1.89	2.5	97.5	0.0	1.45	0.48	0.78	0.82	2.88	9055	454	4	259	0	0	0	logfile
✔	7N3o	24142	2024-12-28	2021-06-01	3.8	4.01	—	3.9	0.003	0.59	0.0	0.04	23.64	0.00	2.285	8.30	1.35	3.6	96.4	0.0	1.09	0.71	0.66	1.57	3.9	0.007	0.85	0.0	0.04	24.24	0.01	2.194	19.33	3.78	4.0	96.0	0.0	-0.04	0.89	0.76	0.75	1.92	8295	454	2	222	0	0	0	logfile
✔	7EZ0	31385	2024-12-28	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	7EZK	31388	2024-12-28	2021-06-01	3.1	2.25	—	2.1	0.011	1.04	0.0	0.06	13.27	0.01	2.206	4.27	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.003	0.64	0.0	0.04	16.16	0.00	2.593	9.10	2.86	1.8	98.2	0.0	0.96	1.61	0.74	0.78	2.75	7196	922	5	0	0	0	0	logfile
✔	7oP8	13014	2024-12-28	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.004	0.67	0.0	0.04	16.20	0.00	1.381	9.78	2.87	6.6	93.4	0.0	-0.85	0.95	0.66	0.79	0.93	8872	1118	2	0	2	0	0	logfile
✔	7oPC	13015	2024-12-31	2021-05-31	3.0	2.99	—	2.9	0.017	1.03	1.0	0.08	14.54	0.01	1.898	5.28	0.05	5.8	94.1	0.1	-2.03	0.70	0.77	3.60	2.9	0.004	0.67	0.0	0.05	16.94	0.00	1.932	7.73	2.08	3.8	96.2	0.0	0.34	0.59	0.72	0.82	3.24	64223	9104	34	103	49	0	0	logfile
✔	7oPD	13016	2024-12-30	2021-05-31	3.0	3.01	2.90	2.9	0.019	1.06	2.0	0.08	14.54	0.01	1.819	5.31	0.04	5.9	94.1	0.1	-2.05	0.70	0.77	3.74	3.0	0.005	0.74	1.0	0.05	17.15	0.00	1.867	9.78	2.13	4.1	95.9	0.0	0.20	1.23	0.73	0.83	3.28	64227	9104	34	103	49	0	0	logfile
✔	7EY6	31321	2024-12-26	2021-05-30	4.3	4.22	—	4.2	0.009	1.56	60.0	0.11	18.03	0.01	2.089	20.79	16.41	6.0	93.8	0.2	-0.70	0.53	0.72	—	4.2	0.004	0.75	0.0	0.04	14.18	0.00	2.322	12.75	0.04	5.9	94.1	0.0	-0.50	1.67	0.53	0.73	—	44028	5628	12	0	0	0	0	logfile
✔	7EYA	31380	2024-12-27	2021-05-30	3.77	3.98	—	4.0	0.008	1.01	0.0	0.04	16.97	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	3.9	0.003	0.70	0.0	0.04	15.76	0.01	2.519	7.54	3.59	8.3	91.5	0.2	-1.96	1.20	0.60	0.78	2.52	4629	576	5	0	3	0	0	logfile
✔	7EY5	31378	2024-12-27	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.76	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.6	0.004	0.81	0.0	0.05	15.12	0.00	2.438	8.04	2.00	10.0	90.0	0.0	-2.38	0.45	0.68	0.83	1.96	5072	648	5	0	0	0	0	logfile
✔	7EY4	31377	2024-12-27	2021-05-29	3.69	3.90	—	3.9	0.007	0.90	0.0	0.05	16.81	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.004	0.80	0.0	0.05	15.74	0.01	2.437	8.44	3.60	9.2	90.8	0.0	-1.71	1.28	0.66	0.81	3.14	4683	585	5	0	3	0	0	logfile
✔	7oP1	13011	2024-12-28	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.7	0.004	0.58	0.0	0.04	15.12	0.00	1.803	3.70	1.25	3.3	96.7	0.0	0.58	0.30	0.70	0.86	1.52	8744	1098	2	0	3	0	0	logfile
✔	7ooP	13010	2024-12-30	2021-05-28	2.9	2.93	2.83	2.8	0.007	0.92	0.0	0.09	14.64	0.01	1.721	4.94	0.00	4.7	95.2	0.1	-1.58	0.80	0.78	2.94	2.9	0.006	0.90	3.0	0.05	16.67	0.00	1.620	10.07	1.62	4.2	95.8	0.0	0.16	4.41	0.82	0.84	2.85	62441	8386	32	103	49	0	0	logfile
✔	7oP3	13012	2024-12-28	2021-05-28	3.5	3.77	—	3.7	0.004	0.78	0.0	0.05	14.58	0.01	2.278	5.95	0.00	4.8	95.2	0.0	-1.24	0.63	0.81	0.96	3.7	0.003	0.59	0.0	0.04	16.30	0.00	2.341	7.70	1.45	4.8	95.2	0.0	-0.31	0.37	0.62	0.82	0.54	8772	1100	2	0	1	0	0	logfile
✔	7ooA	13008	2024-12-31	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	15.57	0.00	2.593	5.87	1.35	0.3	99.7	0.0	2.67	1.12	0.70	0.88	3.46	15610	1834	14	0	35	0	0	logfile
✔	7EXD	31371	2024-12-28	2021-05-27	3.4	2.47	—	2.2	0.003	0.52	0.0	0.04	12.79	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.003	0.63	0.0	0.04	16.07	0.00	2.510	10.34	2.75	1.9	98.1	0.0	0.84	1.20	0.74	0.76	2.10	8749	1118	6	0	1	0	0	logfile

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