Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oo6	13006	2024-12-31	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	12.22	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.454	7.49	1.49	1.3	98.7	0.0	2.51	1.55	0.64	0.82	2.26	14546	1827	14	0	14	0	0	logfile
✔	7oo8	13007	2024-12-30	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.86	0.00	2.595	9.47	1.62	1.3	98.7	0.0	2.41	1.14	0.65	0.79	2.14	13923	1827	7	0	0	0	0	logfile
✔	7oNU	13002	2024-12-31	2021-05-26	3.0	3.11	2.88	3.1	0.005	0.58	0.0	0.04	16.02	0.01	1.890	4.49	0.07	2.4	97.6	0.0	0.53	0.74	0.81	4.05	3.1	0.003	0.55	0.0	0.04	17.53	0.00	2.283	4.90	0.76	1.8	98.2	0.0	1.45	0.41	0.76	0.88	3.30	15083	1763	12	66	6	0	0	logfile
✔	7oo0	13003	2024-12-31	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	28.47	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.64	0.0	0.05	15.00	0.00	2.477	5.50	0.61	0.5	99.5	0.0	2.56	1.55	0.61	0.79	2.46	16016	1834	14	0	56	0	0	logfile
✔	7EXA	31367	2024-12-27	2021-05-26	2.9	2.57	—	2.8	0.010	1.22	0.0	0.07	16.18	0.00	1.984	12.75	1.60	2.2	97.8	0.0	-0.45	0.32	0.85	4.31	2.8	0.003	0.56	0.0	0.04	17.39	0.00	2.598	3.11	2.56	1.6	98.4	0.0	2.43	0.88	0.32	0.87	3.13	3088	374	2	6	0	0	0	logfile
✔	7oNL	12997	2024-12-30	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.64	0.0	0.04	13.97	0.00	2.612	8.10	2.84	1.2	98.8	0.0	2.29	1.18	0.63	0.80	1.59	13923	1827	7	0	0	0	0	logfile
✔	7N0B	24102	2024-12-27	2021-05-25	3.9	4.21	—	4.2	0.006	1.10	1.0	0.06	16.97	0.01	1.921	8.42	0.36	1.9	98.1	0.0	-3.60	0.73	0.76	1.95	4.2	0.003	0.70	0.0	0.04	17.74	0.00	2.233	11.82	2.89	5.7	94.3	0.0	-0.97	1.28	0.74	0.78	1.65	5875	643	7	39	7	1	0	logfile
✔	7N0K	24107	2024-12-27	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.62	0.0	0.03	19.21	0.00	2.576	6.98	4.66	2.0	98.0	0.0	3.53	0.70	0.57	0.74	1.02	5154	626	2	0	0	0	0	logfile
✔	7oN1	12993	2024-12-29	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7N0C	24103	2024-12-27	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.006	1.00	0.0	0.04	17.18	0.00	1.087	10.53	3.07	5.0	95.0	0.0	-1.64	1.16	0.72	0.82	2.03	6088	644	6	49	7	1	0	logfile
✔	7oNi	12995	2024-12-28	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	2.219	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.76	0.00	2.380	5.56	0.89	3.2	96.8	0.0	1.44	0.38	0.88	0.87	2.06	8840	1141	6	0	7	0	0	logfile
✔	7EW0	31343	2024-12-29	2021-05-24	3.42	4.10	—	4.1	0.003	0.63	0.0	0.04	14.14	0.00	2.087	6.86	0.71	2.9	97.1	0.0	-1.47	0.59	0.76	1.95	4.1	0.003	0.60	0.0	0.04	16.47	0.00	2.521	5.02	3.05	3.0	97.0	0.0	0.04	0.45	0.61	0.80	1.87	8987	1142	6	0	1	0	0	logfile
✔	7EW7	31349	2024-12-29	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.73	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.003	0.57	0.0	0.04	15.64	0.00	2.512	4.90	3.65	4.5	95.5	0.0	-0.14	0.95	0.60	0.79	1.97	9004	1144	6	0	1	0	0	logfile
✔	7MZ5	24083	2024-12-31	2021-05-24	2.76	2.90	2.75	3.0	0.005	0.72	4.0	0.05	11.21	0.00	2.138	1.25	1.03	4.1	95.5	0.4	1.27	0.56	0.80	2.22	3.0	0.003	0.62	0.0	0.04	15.69	0.00	2.290	8.67	1.80	5.9	94.1	0.0	1.64	0.71	0.55	0.82	1.65	14291	1724	8	0	7	0	0	logfile
✔	7EW4	31347	2024-12-28	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.41	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.003	0.54	0.0	0.04	15.05	0.00	2.477	6.59	1.67	2.7	97.3	0.0	1.06	0.95	0.68	0.80	2.28	8929	1145	6	0	3	0	0	logfile
✔	7oMM	12990	2024-12-30	2021-05-24	3.4	3.84	—	3.8	0.010	1.47	6.0	0.10	18.84	0.01	1.818	12.01	16.45	9.3	90.2	0.5	-2.70	0.49	0.47	1.89	3.8	0.004	0.73	0.0	0.05	17.18	0.01	2.408	12.01	3.69	11.2	88.7	0.1	-2.19	1.08	0.62	0.71	1.65	13981	1794	4	0	0	0	0	logfile
✔	7EVZ	31342	2024-12-29	2021-05-24	3.07	3.81	—	3.7	0.004	0.58	0.0	0.04	13.33	0.00	2.160	7.10	0.30	3.2	96.8	0.0	-1.99	0.54	0.75	1.86	3.7	0.003	0.58	0.0	0.04	15.47	0.00	2.357	4.73	2.94	4.0	96.0	0.0	0.14	0.93	0.49	0.72	1.61	9078	1144	6	0	5	0	0	logfile
✔	7EVM	31329	2024-12-28	2021-05-21	2.5	3.26	—	3.1	0.005	0.85	1.0	0.06	15.26	0.00	2.175	11.52	3.36	3.8	96.2	0.0	-2.23	0.59	0.70	2.20	3.1	0.003	0.67	0.0	0.04	16.57	0.00	2.512	8.27	3.48	3.2	96.8	0.0	0.23	1.41	0.62	0.77	2.19	8462	1037	6	0	7	0	0	logfile
✔	7EVP	31339	2024-12-27	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.61	0.0	0.05	13.67	0.00	2.424	7.22	3.04	5.9	94.1	0.0	-1.99	0.52	0.69	0.81	3.09	6616	840	4	0	0	0	0	logfile
✔	7MYo	24082	2024-12-29	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.19	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	3.2	0.007	1.20	1.0	0.05	17.88	0.01	2.023	22.47	3.13	5.8	94.1	0.1	-0.92	1.18	0.59	0.69	1.16	10634	1278	3	0	1	0	0	logfile

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