Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oH0	12890	2024-12-27	2021-05-07	3.9	4.55	—	4.3	0.005	0.92	0.0	0.05	13.94	0.01	2.046	29.13	0.26	11.9	87.9	0.1	-5.70	0.80	0.71	1.16	4.3	0.003	0.79	0.0	0.05	15.91	0.01	2.113	16.30	2.48	7.7	92.3	0.0	-3.21	1.42	0.79	0.69	1.15	6830	870	3	0	0	0	0	logfile
✔	7MR2	23954	2024-12-31	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.77	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.003	0.60	0.0	0.04	14.99	0.00	2.376	8.83	0.00	6.4	93.6	0.0	-0.11	1.17	0.90	0.85	—	16671	2075	3	0	0	0	0	logfile
✔	7MQR	23950	2024-12-31	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	15.73	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.003	0.66	0.0	0.05	13.94	0.00	2.429	8.88	0.00	7.0	92.8	0.2	-1.18	0.49	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	7oGL	12883	2024-12-31	2021-05-06	3.4	3.47	3.42	3.5	0.016	1.97	20.0	0.12	13.71	0.01	2.082	6.91	1.70	4.9	95.1	0.0	-1.18	0.65	0.77	2.25	3.4	0.003	0.63	0.0	0.04	15.93	0.00	2.457	4.45	2.27	3.4	96.6	0.0	0.59	0.86	0.72	0.83	2.47	14763	2079	6	0	0	3	0	logfile
✔	7oGK	12882	2024-12-31	2021-05-06	3.4	4.11	3.60	3.7	0.014	1.75	3.0	0.11	13.82	0.01	2.293	3.59	1.65	4.0	96.0	0.0	-0.55	0.84	0.82	2.48	3.7	0.004	0.61	0.0	0.04	14.50	0.00	2.601	3.94	1.50	2.7	97.3	0.0	0.99	1.17	0.83	0.81	2.35	14731	2085	7	8	0	17	0	logfile
✔	7oG5	12878	2024-12-31	2021-05-06	3.37	3.57	—	3.6	0.010	0.95	0.0	0.05	14.71	0.01	2.021	19.65	0.00	10.1	89.9	0.0	-1.60	0.63	0.82	2.97	3.6	0.004	0.74	0.0	0.04	17.15	0.01	2.359	12.33	2.33	6.7	93.3	0.0	0.53	0.63	0.60	0.80	1.89	15444	1892	12	0	0	0	0	logfile
✔	7MQo	23949	2024-12-29	2021-05-06	3.4	3.62	3.43	3.7	0.004	0.71	0.0	0.05	14.61	0.01	2.030	10.26	0.17	13.1	86.7	0.2	-2.87	0.67	0.75	1.17	3.7	0.004	0.69	0.0	0.05	16.51	0.00	2.374	7.49	2.45	12.6	87.2	0.2	-2.67	0.50	0.71	0.80	1.78	10642	1288	10	0	16	0	0	logfile
✔	7MQS	23951	2024-12-30	2021-05-06	4.4	4.79	4.46	4.4	0.015	1.73	7.0	0.10	15.00	0.01	2.416	3.33	0.00	9.6	89.8	0.6	-3.94	0.83	0.76	—	4.4	0.003	0.75	0.0	0.05	13.93	0.00	2.363	13.07	0.00	8.9	90.7	0.4	-1.78	0.63	0.84	0.78	—	14028	1739	8	0	0	0	0	logfile
✔	7oG6	12879	2024-12-27	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.65	0.0	0.04	17.44	0.01	2.519	5.44	3.05	5.1	94.9	0.0	-0.49	0.53	0.27	0.84	2.91	1602	199	2	5	0	0	0	logfile
✔	7MPE	23932	2024-12-29	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.62	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.003	0.62	0.0	0.04	15.95	0.00	2.495	9.73	2.88	5.0	95.0	0.0	-0.61	0.39	0.64	0.79	1.12	11214	1428	1	0	0	0	0	logfile
✔	7oEA	12862	2024-12-30	2021-05-02	2.7	3.26	2.79	2.6	0.004	0.77	2.0	0.06	13.35	0.00	2.061	6.12	0.08	4.5	95.3	0.2	0.83	0.90	0.85	3.30	2.7	0.006	0.69	0.0	0.04	15.03	0.00	1.921	6.12	0.53	5.0	95.0	0.1	1.16	0.74	0.92	0.91	3.22	11703	1432	4	7	2	17	0	logfile
✔	7oEB	12863	2024-12-30	2021-05-02	3.04	3.38	3.05	3.0	0.004	0.56	0.0	0.04	14.78	0.00	2.121	7.62	0.53	4.0	95.7	0.2	0.94	0.87	0.82	3.00	3.0	0.002	0.52	0.0	0.04	15.81	0.00	2.018	6.21	0.38	3.6	96.4	0.0	1.61	1.78	0.90	0.88	2.69	11682	1434	3	6	3	1	0	logfile
✔	7oE3	12860	2024-12-30	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.002	0.59	0.0	0.04	16.18	0.00	2.145	4.40	1.92	6.5	93.5	0.0	0.32	0.43	0.93	0.89	1.51	11904	1478	2	0	2	0	0	logfile
✔	7oE7	12861	2024-12-29	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	3.7	0.003	0.68	0.0	0.04	16.38	0.00	2.058	6.55	2.38	6.7	93.3	0.0	-0.84	1.35	0.85	0.76	0.90	11116	1382	2	0	2	0	0	logfile
✔	7MoC	23924	2024-12-30	2021-05-01	4.56	3.76	4.47	3.7	0.012	1.82	17.0	0.11	13.17	0.02	2.211	1.99	0.19	1.7	98.3	0.0	-0.04	0.58	0.68	—	3.7	0.004	0.75	0.0	0.04	14.24	0.00	2.359	15.85	0.00	1.8	98.2	0.0	2.10	1.61	0.58	0.70	—	13883	1755	2	0	0	0	0	logfile
✔	7oE0	12856	2024-12-27	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	24.11	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.003	0.66	0.0	0.04	23.73	0.00	2.013	13.33	2.36	8.7	91.3	0.0	-1.31	0.40	0.76	0.70	1.83	50296	2208	29	1510	0	530	0	logfile
✔	7EQ9	31256	2024-12-30	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	3.6	0.004	0.64	0.0	0.04	17.51	0.00	2.121	6.43	3.16	3.6	96.4	0.0	2.34	0.64	0.79	0.81	1.38	62520	7620	60	0	0	0	0	logfile
✔	7MN6	23917	2024-12-29	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.63	0.0	0.05	13.64	0.00	2.524	3.40	0.38	3.8	96.1	0.1	0.22	1.39	0.84	0.86	3.12	9649	1227	8	0	13	0	0	logfile
✔	7MN8	23918	2024-12-30	2021-04-30	3.45	3.96	3.53	3.8	0.012	1.32	0.0	0.07	11.57	0.01	2.340	1.46	0.14	1.8	98.0	0.1	-0.03	0.84	0.83	2.13	3.8	0.004	0.90	1.0	0.05	13.67	0.00	2.324	7.46	1.39	2.8	97.1	0.1	0.13	1.45	0.85	0.84	2.46	12947	1661	10	0	13	0	0	logfile
✔	7oE1	12857	2024-12-27	2021-04-30	3.05	3.27	3.30	3.0	0.009	0.93	0.0	0.05	23.98	0.01	1.947	32.22	0.00	15.1	84.9	0.0	-3.75	0.82	0.72	2.04	3.0	0.005	0.74	0.0	0.04	23.60	0.01	2.018	17.01	3.23	12.3	87.7	0.0	-2.63	0.51	0.85	0.77	1.31	51092	2320	21	1530	0	0	0	logfile

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