Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W2E	21526	2024-12-30	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.004	0.80	0.0	0.05	13.33	0.01	2.301	13.37	0.04	6.4	93.6	0.1	-1.05	1.60	0.39	0.74	—	62525	7943	19	0	0	0	0	logfile
✔	6M3W	30072	2024-12-28	2020-03-04	3.9	4.04	—	3.9	0.011	1.31	0.0	0.08	20.56	0.01	2.264	9.72	0.66	11.1	88.9	0.0	-4.25	0.82	0.78	1.15	3.9	0.003	0.80	0.0	0.05	16.34	0.00	2.493	12.45	2.77	5.9	94.1	0.0	-1.47	1.70	0.82	0.78	0.52	8307	1032	6	0	24	0	0	logfile
✔	6W1S	21514	2024-12-27	2020-03-04	4.02	4.48	—	4.1	0.008	0.79	0.0	0.04	12.39	0.00	1.820	9.41	0.03	13.4	86.4	0.2	-3.32	0.81	0.74	—	4.1	0.003	0.70	0.0	0.04	12.20	0.00	2.428	8.41	0.00	13.2	86.7	0.1	-0.98	0.55	0.81	0.75	—	47275	6862	26	0	567	0	0	logfile
✔	6M3X	30073	2024-12-30	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.003	0.65	0.0	0.05	16.93	0.00	2.168	5.93	1.76	2.9	97.1	0.0	0.23	0.42	0.78	0.91	6.50	62387	7440	72	0	24	2243	0	logfile
✔	6W18	21503	2024-12-30	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.72	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.73	0.0	0.04	12.85	0.00	2.382	6.54	0.09	7.2	92.8	0.0	-1.43	0.94	0.76	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	6VYM	21464	2024-12-30	2020-02-27	3.7	3.94	—	3.9	0.006	0.88	0.0	0.06	14.09	0.01	2.339	6.48	0.00	7.1	92.9	0.0	-4.56	0.76	0.82	2.15	3.9	0.003	0.70	0.0	0.05	16.05	0.00	2.477	8.81	1.94	6.2	93.8	0.0	-0.31	1.17	0.74	0.82	2.05	13573	1778	7	0	0	0	0	logfile
✔	6VZ8	21487	2024-12-26	2020-02-27	3.45	3.81	—	3.8	0.011	1.54	1.0	0.08	13.54	0.02	1.913	3.71	0.61	3.3	96.5	0.2	-1.89	0.72	0.71	1.81	3.8	0.004	0.74	2.0	0.05	15.67	0.00	1.927	6.81	2.15	2.2	97.7	0.0	0.40	1.42	0.79	0.81	1.72	42132	5568	32	0	24	0	0	logfile
✔	6VYL	21463	2024-12-30	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.84	2.99	3.4	0.002	0.53	0.0	0.04	15.72	0.00	2.553	6.14	1.79	3.1	96.9	0.0	-0.02	0.51	0.66	0.82	2.77	13671	1792	7	0	0	0	0	logfile
✔	6VYK	21462	2024-12-31	2020-02-27	3.2	3.31	—	3.3	0.010	1.74	0.0	0.07	15.96	0.00	2.122	3.09	0.00	4.5	95.5	0.0	-3.22	0.72	0.81	3.40	3.3	0.004	1.32	0.0	0.05	15.88	0.00	2.570	7.13	1.79	2.9	97.1	0.0	0.40	2.52	0.71	0.85	3.29	14623	1869	12	0	7	0	0	logfile
✔	6M1Y	30049	2024-12-31	2020-02-26	3.2	3.58	—	3.4	0.006	0.95	0.0	0.06	14.12	0.01	2.245	5.78	1.65	9.6	89.0	1.4	-6.04	0.71	0.84	2.56	3.4	0.003	0.72	0.0	0.04	14.79	0.00	2.500	4.98	1.40	8.4	91.2	0.3	-0.34	4.54	0.71	0.87	2.45	14858	1876	12	0	22	2	0	logfile
✔	6VYG	21459	2024-12-30	2020-02-26	3.5	3.58	—	3.5	0.004	0.69	0.0	0.04	14.05	0.00	2.042	7.99	0.54	9.2	90.8	0.0	-3.60	0.73	0.84	3.44	3.5	0.003	0.60	0.0	0.04	16.04	0.00	2.563	6.10	1.83	7.2	92.8	0.0	-1.01	0.40	0.71	0.84	2.37	13616	1732	4	0	0	0	0	logfile
✔	6VYF	21458	2024-12-30	2020-02-26	3.3	3.38	—	3.3	0.005	0.68	0.0	0.04	13.96	0.00	2.223	8.29	0.27	8.7	91.3	0.0	-3.53	0.73	0.87	2.78	3.3	0.003	0.57	0.0	0.04	15.65	0.00	2.511	5.16	3.29	7.5	92.5	0.0	-0.84	0.37	0.72	0.88	3.00	13624	1728	4	0	0	0	0	logfile
✔	6M22	30058	2024-12-30	2020-02-26	2.7	2.86	—	2.8	0.009	1.05	0.0	0.06	14.67	0.01	1.962	4.54	1.22	7.5	91.7	0.8	-5.21	0.74	0.84	3.10	2.8	0.003	0.69	0.0	0.04	15.32	0.00	2.517	3.55	1.49	7.8	92.0	0.2	0.70	0.63	0.72	0.89	2.78	14028	1770	12	0	24	40	0	logfile
✔	6VYi	21461	2024-12-27	2020-02-26	3.0	3.28	—	3.2	0.010	0.94	0.0	0.05	19.28	0.00	2.157	10.66	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	3.2	0.003	0.64	0.0	0.04	18.86	0.00	2.467	7.72	2.38	6.5	93.5	0.0	1.16	0.60	0.59	0.86	1.85	6916	812	4	0	4	0	0	logfile
✔	6M1H	30047	2024-12-28	2020-02-26	3.6	3.71	—	3.6	0.007	0.96	0.0	0.06	15.34	0.01	1.782	9.47	0.21	6.1	93.9	0.0	-4.70	0.82	0.79	1.90	3.6	0.003	0.69	0.0	0.04	16.70	0.00	2.420	10.03	3.29	4.3	95.7	0.0	-1.58	1.29	0.81	0.79	1.52	9036	1139	6	0	0	0	0	logfile
✔	6M23	30061	2024-12-31	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.89	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.3	0.003	0.77	0.0	0.05	15.62	0.00	2.499	6.55	2.77	9.9	89.7	0.4	-1.45	0.77	0.67	0.83	2.00	14744	1872	12	0	18	2	0	logfile
✔	6Y6K	10706	2024-12-29	2020-02-26	3.78	3.86	—	3.8	0.012	0.99	1.0	0.06	16.00	0.01	1.889	11.41	2.36	12.5	87.4	0.2	-5.70	0.75	0.88	2.58	3.8	0.004	0.67	0.0	0.04	16.93	0.00	1.937	2.85	3.15	6.8	93.1	0.1	-3.01	1.00	0.77	0.88	2.38	10351	1299	2	0	1	0	0	logfile
✔	6M1i	30048	2024-12-28	2020-02-26	3.5	3.33	—	3.2	0.008	0.97	0.0	0.06	15.40	0.01	2.210	8.41	0.32	7.1	92.9	0.0	-4.80	0.83	0.80	1.81	3.2	0.003	0.75	0.0	0.04	16.58	0.00	2.357	9.71	2.42	5.0	95.0	0.0	-1.19	1.31	0.82	0.80	1.00	8916	1126	6	0	0	0	0	logfile
✔	6VYH	21460	2024-12-27	2020-02-26	3.0	3.13	—	3.1	0.013	1.11	1.0	0.06	14.40	0.01	1.922	11.42	2.00	8.8	90.0	1.2	-4.54	0.66	0.81	2.78	3.1	0.004	0.71	0.0	0.04	16.31	0.00	2.024	5.07	4.54	5.1	94.7	0.2	-0.45	0.58	0.64	0.82	2.36	6093	860	5	0	2	1	0	logfile
✔	6Y5K	10700	2024-12-29	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.76	0.0	0.05	13.06	0.00	1.781	10.42	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.004	0.70	0.0	0.05	12.70	0.00	2.343	13.90	0.00	4.1	95.9	0.0	-0.28	0.99	0.87	0.79	—	10614	1335	9	0	6	0	0	logfile

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