Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y5E	10695	2024-12-31	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.71	0.01	2.429	0.83	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.61	0.0	0.03	25.91	0.00	2.471	7.16	1.04	1.9	98.0	0.1	2.53	0.62	0.84	0.84	2.21	15292	1120	18	306	9	0	0	logfile
✔	6Y5G	10696	2024-12-30	2020-02-25	3.0	3.07	3.02	3.0	0.005	0.66	0.0	0.10	15.74	0.00	2.189	3.69	0.94	4.6	95.4	0.0	-2.94	0.73	0.84	4.03	3.0	0.003	0.64	0.0	0.05	15.92	0.00	2.261	2.50	3.51	3.7	96.3	0.0	-0.71	1.18	0.73	0.86	4.01	12036	1470	18	0	36	0	0	logfile
✔	6Y5H	10697	2024-12-30	2020-02-25	3.0	3.10	3.04	3.1	0.004	0.66	0.0	0.08	16.34	0.01	2.238	2.93	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.003	0.62	0.0	0.04	16.73	0.00	2.399	2.89	3.20	2.2	97.8	0.0	-0.21	1.93	0.75	0.86	3.56	11994	1470	18	0	33	0	0	logfile
✔	6Y5K	10700	2024-12-29	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.76	0.0	0.05	13.06	0.00	1.781	10.42	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.004	0.70	0.0	0.05	12.70	0.00	2.343	13.90	0.00	4.1	95.9	0.0	-0.28	0.99	0.87	0.79	—	10614	1335	9	0	6	0	0	logfile
✔	6Y5L	10701	2024-12-27	2020-02-25	3.6	3.66	2.91	3.6	0.004	0.70	0.0	0.05	14.31	0.01	2.032	5.91	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.09	0.0	0.05	18.08	0.01	2.342	16.79	2.99	4.1	95.9	0.0	0.42	1.01	0.69	0.75	0.78	3855	477	9	0	3	0	0	logfile
✔	6Y5R	10703	2024-12-30	2020-02-25	3.76	3.87	3.73	3.8	0.004	0.64	0.0	0.04	12.77	0.00	2.147	7.90	0.07	4.4	95.6	0.0	-2.26	0.68	0.85	2.03	3.8	0.003	0.63	0.0	0.04	13.22	0.00	2.482	7.31	1.43	3.6	96.4	0.0	0.92	0.80	0.68	0.85	1.81	13592	1758	6	0	8	0	0	logfile
✔	6Y50	10688	2024-12-31	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	11.03	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.68	0.0	0.05	12.59	0.00	2.004	7.12	0.00	11.6	88.3	0.1	-1.68	0.55	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6VXP	21447	2024-12-31	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.9	0.005	0.70	0.0	0.04	13.69	0.00	2.572	5.49	1.67	2.4	97.6	0.0	2.66	1.77	0.76	0.86	2.14	14819	1939	7	0	0	0	0	logfile
✔	6VXJ	21440	2024-12-28	2020-02-22	4.1	4.12	—	4.1	0.007	1.02	0.0	0.05	16.52	0.01	2.251	6.79	3.32	9.5	90.5	0.0	-5.74	0.57	0.78	—	4.1	0.006	0.82	0.0	0.05	13.85	0.00	2.507	13.08	0.00	9.0	91.0	0.0	-2.11	0.71	0.58	0.79	—	8895	1132	4	0	3	0	0	logfile
✔	6VXM	21444	2024-12-31	2020-02-22	3.06	3.76	—	3.4	0.018	1.02	0.0	0.05	12.84	0.00	2.208	5.67	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	3.4	0.004	0.52	0.0	0.04	13.35	0.00	2.607	3.17	1.42	2.3	97.7	0.0	2.66	1.19	0.73	0.85	2.33	15064	1939	14	0	21	0	0	logfile
✔	6VXo	21446	2024-12-28	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.97	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.76	0.0	0.04	19.03	0.00	2.490	9.40	8.82	8.7	91.3	0.0	-0.14	0.62	0.60	0.81	0.81	8048	904	8	0	12	0	0	logfile
✔	6VXN	21445	2024-12-31	2020-02-22	2.96	3.62	—	3.4	0.013	1.07	0.0	0.06	15.68	0.01	2.332	5.68	0.00	1.6	98.4	0.0	-3.41	0.75	0.82	3.10	3.3	0.003	0.72	0.0	0.04	16.14	0.00	2.456	7.05	0.90	2.7	97.3	0.0	1.21	1.71	0.70	0.81	2.60	14385	1862	12	0	7	0	0	logfile
✔	6M0R	30034	2024-12-27	2020-02-22	2.7	2.84	—	2.9	0.011	0.96	0.0	0.05	20.90	0.01	2.036	1.27	0.00	1.4	98.6	0.0	-4.42	0.68	0.72	1.37	2.8	0.004	0.64	0.0	0.04	17.60	0.00	2.306	4.68	1.71	1.8	98.2	0.0	0.88	2.13	0.74	0.84	2.96	46354	2915	43	0	37	184	22687	logfile
✔	6M0S	30035	2024-12-26	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	3.7	0.003	0.58	0.0	0.04	14.37	0.00	2.236	4.19	1.67	2.9	97.1	0.0	-0.41	1.31	0.76	0.81	1.71	44660	2909	15	0	0	0	22618	logfile
✔	6VXi	21438	2024-12-28	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	15.95	0.00	2.037	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.003	0.76	0.0	0.04	16.73	0.00	2.454	10.45	4.46	7.5	92.5	0.0	-2.07	0.60	0.60	0.79	2.40	8898	1132	4	0	3	0	0	logfile
✔	6VXF	21436	2024-12-28	2020-02-21	3.5	3.42	—	3.4	0.009	1.04	0.0	0.06	15.36	0.01	2.025	4.68	1.25	7.7	92.1	0.2	-4.65	0.63	0.81	2.40	3.4	0.003	0.63	0.0	0.04	16.74	0.00	2.564	9.59	3.01	6.3	93.7	0.0	-0.38	1.25	0.63	0.81	2.09	8786	1130	2	0	0	0	0	logfile
✔	6VX5	21430	2024-12-30	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.64	0.0	0.04	16.31	0.00	2.388	7.67	1.94	1.5	98.5	0.0	-0.51	0.95	0.68	0.80	2.31	13056	1575	6	0	1	0	0	logfile
✔	6VX3	21428	2024-12-28	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.67	0.00	1.829	25.97	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.70	0.0	0.04	18.96	0.00	2.404	7.95	5.78	3.8	96.2	0.0	-1.51	1.26	0.59	0.80	2.13	7780	900	8	0	8	0	0	logfile
✔	6VX6	21431	2024-12-31	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.003	0.64	0.0	0.04	16.41	0.00	2.300	7.15	1.32	1.3	98.7	0.0	0.88	0.98	0.77	0.89	3.26	15061	1830	10	0	6	0	0	logfile
✔	6VXH	21437	2024-12-28	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	16.22	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.004	0.79	0.0	0.05	16.82	0.00	2.400	9.03	3.53	9.6	90.4	0.0	-2.14	1.72	0.65	0.82	—	8879	1130	4	0	3	0	0	logfile

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