Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VWX	21425	2024-12-28	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.96	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.004	0.71	0.0	0.04	19.31	0.00	2.433	7.76	7.16	6.4	93.6	0.0	0.74	0.59	0.65	0.85	2.09	7782	900	8	0	10	0	0	logfile
✔	6VWK	21419	2024-12-28	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	3.5	0.004	0.67	0.0	0.04	15.17	0.00	2.528	5.58	1.77	2.0	98.0	0.0	3.53	1.21	0.63	0.84	1.45	8423	1133	13	0	0	0	0	logfile
✔	6VWi	21417	2024-12-30	2020-02-19	3.7	4.08	—	3.9	0.007	0.88	0.0	0.05	14.89	0.01	2.298	4.53	1.97	11.9	88.1	0.0	-2.44	0.78	0.74	1.55	3.9	0.003	0.63	0.0	0.04	15.53	0.00	2.376	4.92	1.69	5.8	94.1	0.1	-1.80	1.03	0.78	0.73	1.55	12752	800	5	0	4	0	6283	logfile
✔	6VWJ	21418	2024-12-30	2020-02-19	4.21	4.58	—	4.2	0.005	0.99	0.0	0.05	13.45	0.01	1.915	9.24	1.20	4.8	94.8	0.4	-1.20	0.79	0.65	—	4.2	0.003	0.66	0.0	0.05	12.91	0.00	2.239	4.92	0.00	8.2	91.7	0.1	-1.38	1.50	0.80	0.67	—	11799	747	2	0	0	0	5789	logfile
✔	6VWG	21415	2024-12-30	2020-02-19	3.21	3.61	—	3.5	0.007	0.89	0.0	0.05	14.65	0.01	1.873	4.30	1.26	11.4	88.6	0.0	-2.78	0.71	0.72	2.81	3.5	0.003	0.68	0.0	0.04	16.32	0.00	2.392	4.53	2.11	8.4	91.6	0.0	-2.49	1.38	0.72	0.74	2.72	12751	800	5	0	4	0	6282	logfile
✔	6VWH	21416	2024-12-28	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.70	0.0	0.04	12.91	0.00	2.322	7.57	0.00	10.5	89.1	0.4	-2.28	1.57	0.71	0.61	—	8461	539	2	0	0	0	4139	logfile
✔	6Y3Y	10676	2024-12-27	2020-02-19	3.39	3.74	3.39	3.7	0.008	1.04	0.0	0.07	17.09	0.01	2.024	4.49	0.33	10.5	89.5	0.0	-4.44	0.80	0.83	4.70	3.7	0.004	0.70	0.0	0.05	12.38	0.00	2.536	7.30	2.61	8.3	91.7	0.0	-2.25	1.29	0.82	0.86	4.09	5854	664	12	0	34	0	0	logfile
✔	6LZ3	30022	2024-12-31	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	17.57	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.004	0.86	1.0	0.05	16.96	0.00	2.424	7.95	2.96	7.7	92.3	0.0	-1.91	0.67	0.80	0.84	2.51	15968	1944	8	0	4	0	0	logfile
✔	6VW2	21410	2024-12-27	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.90	0.0	0.05	15.25	0.00	2.507	12.79	4.76	15.9	84.1	0.0	-5.27	0.43	0.39	0.71	1.38	1800	240	10	0	0	0	0	logfile
✔	6LZ0	30020	2024-12-27	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.11	0.01	2.126	17.43	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.78	0.0	0.04	16.44	0.00	2.568	7.26	5.86	5.0	95.0	0.0	0.87	1.67	0.42	0.68	1.86	4006	591	3	0	1	0	0	logfile
✔	6LYY	30019	2024-12-27	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.74	0.0	0.04	16.11	0.00	2.490	8.65	5.09	4.6	95.4	0.0	0.11	1.24	0.45	0.66	1.56	4104	597	3	0	1	0	0	logfile
✔	6LYP	30017	2024-12-31	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.005	0.79	0.0	0.05	14.81	0.00	2.536	11.83	5.19	10.0	90.0	0.0	-3.32	1.22	0.53	0.73	1.54	15169	2009	7	0	0	0	0	logfile
✔	6LYU	30018	2024-12-29	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.005	0.84	0.0	0.05	14.04	0.01	2.359	22.62	0.00	13.3	86.7	0.0	-3.20	0.82	0.86	0.80	—	11118	1430	5	0	0	0	0	logfile
✔	6Y1Z	10673	2024-12-31	2020-02-14	2.82	3.48	—	3.3	0.003	0.58	0.0	0.05	15.31	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.58	0.0	0.04	13.76	0.00	2.532	4.17	1.99	2.5	97.5	0.0	1.22	0.51	0.59	0.73	2.47	16610	1930	25	0	35	0	0	logfile
✔	6VU5	21387	2024-12-27	2020-02-14	3.5	3.59	3.38	3.5	0.007	0.99	0.0	0.06	15.26	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.72	0.0	0.04	16.96	0.00	2.576	11.53	3.36	6.3	93.7	0.0	-2.02	0.51	0.72	0.74	1.68	4657	576	3	0	27	0	0	logfile
✔	6LYG	30016	2024-12-31	2020-02-14	3.1	3.32	—	3.3	0.004	0.58	0.0	0.04	14.34	0.00	2.299	8.29	0.00	1.7	98.3	0.0	-0.02	0.54	0.76	2.03	3.3	0.004	0.60	0.0	0.04	15.80	0.00	2.524	2.48	0.86	1.2	98.8	0.0	3.07	0.68	0.64	0.85	1.69	14688	1856	16	0	8	0	0	logfile
✔	6VU8	21388	2024-12-27	2020-02-14	4.14	4.31	4.17	4.2	0.006	1.05	0.0	0.05	16.21	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.004	0.85	0.0	0.05	14.92	0.01	2.404	15.74	0.18	8.1	91.9	0.0	-1.77	1.28	0.73	0.79	—	5249	669	2	0	0	0	0	logfile
✔	6LY9	30015	2024-12-30	2020-02-13	3.93	3.98	—	3.9	0.006	0.75	0.0	0.04	14.60	0.00	2.195	21.56	1.05	7.3	92.7	0.0	-3.45	0.74	0.82	1.13	3.9	0.004	0.83	0.0	0.04	16.78	0.01	2.488	18.53	4.56	4.8	95.2	0.0	0.38	1.27	0.73	0.81	0.51	13888	1894	16	0	0	0	0	logfile
✔	6VTT	21383	2024-12-31	2020-02-13	3.7	4.22	3.79	4.0	0.005	0.82	3.0	0.05	14.72	0.01	2.214	6.21	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.004	0.68	0.0	0.05	13.15	0.00	2.416	6.61	2.18	5.3	94.7	0.0	-1.84	0.51	0.82	0.83	1.78	16607	1928	36	0	103	0	0	logfile
✔	6LXW	30008	2024-12-30	2020-02-12	3.27	3.40	3.32	3.4	0.015	1.27	0.0	0.07	15.58	0.01	2.241	6.38	1.82	13.2	86.7	0.1	-4.21	0.74	0.81	2.94	3.4	0.004	0.90	1.0	0.05	16.62	0.00	2.284	9.08	4.36	7.8	92.2	0.0	-1.76	0.95	0.73	0.83	2.45	12299	1595	7	0	0	0	0	logfile

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