Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LXV	30007	2024-12-29	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.13	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.003	0.65	0.0	0.05	16.47	0.00	2.105	3.52	0.44	3.4	96.6	0.0	0.93	0.93	0.79	0.91	6.21	54924	6448	24	0	16	2967	0	logfile
✔	6VTK	21380	2024-12-29	2020-02-12	2.82	3.35	—	3.3	0.005	0.82	0.0	0.05	9.13	0.01	2.016	3.10	0.00	3.2	96.8	0.0	-4.44	0.71	0.81	4.37	3.3	0.004	0.65	0.0	0.04	13.89	0.00	2.532	4.05	1.50	2.3	97.7	0.0	-0.31	1.20	0.71	0.83	3.76	10686	1338	6	0	6	0	0	logfile
✔	6LXW	30008	2024-12-30	2020-02-12	3.27	3.40	3.32	3.4	0.015	1.27	0.0	0.07	15.58	0.01	2.241	6.38	1.82	13.2	86.7	0.1	-4.21	0.74	0.81	2.94	3.4	0.004	0.90	1.0	0.05	16.62	0.00	2.284	9.08	4.36	7.8	92.2	0.0	-1.76	0.95	0.73	0.83	2.45	12299	1595	7	0	0	0	0	logfile
✔	6Y1A	10669	2024-12-27	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.006	0.81	0.0	0.04	11.00	0.00	2.023	17.13	0.60	7.6	92.4	0.0	-4.28	1.49	0.56	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6VSC	21376	2024-12-29	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.78	0.0	0.04	18.22	0.01	2.471	14.52	3.19	0.3	99.6	0.1	0.23	1.20	0.87	0.85	3.32	9670	1175	5	0	0	0	0	logfile
✔	6LXD	30005	2024-12-30	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	16.82	0.00	2.239	15.36	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.78	0.0	0.04	18.04	0.00	2.388	14.64	2.09	9.4	90.6	0.0	-1.70	0.69	0.88	0.80	0.79	9435	963	5	72	2	0	0	logfile
✔	6VSA	21373	2024-12-29	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.58	0.0	0.04	17.32	0.00	2.610	8.13	1.74	0.3	99.7	0.1	0.59	1.13	0.93	0.90	4.40	9712	1175	10	0	0	42	0	logfile
✔	6VRW	21372	2024-12-31	2020-02-10	3.71	4.25	3.76	4.0	0.007	0.93	0.0	0.07	15.78	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.003	0.66	0.0	0.05	14.36	0.00	2.522	5.55	2.28	5.5	94.5	0.0	-1.98	0.41	0.82	0.82	2.54	14568	1671	36	0	96	0	0	logfile
✔	6LXE	30006	2024-12-29	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.77	0.0	0.04	14.86	0.00	2.344	16.22	0.00	9.6	90.4	0.0	-2.07	1.28	0.85	0.70	—	6519	813	4	0	2	0	0	logfile
✔	6VRS	21371	2024-12-30	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.49	0.0	0.04	15.01	0.00	2.047	3.52	0.08	2.0	98.0	0.0	2.19	1.00	0.93	0.90	4.46	12208	1548	12	0	8	16	0	logfile
✔	6VRB	21366	2024-12-29	2020-02-07	3.0	3.08	—	3.1	0.009	1.20	2.0	0.08	16.05	0.01	1.877	16.10	3.12	7.9	92.1	0.0	-4.13	0.74	0.77	2.24	3.1	0.003	0.63	0.0	0.04	18.91	0.00	2.444	4.72	2.79	5.3	94.7	0.0	0.02	1.43	0.80	0.87	2.19	11581	1260	3	52	0	0	0	logfile
✔	6VRC	21367	2024-12-29	2020-02-07	3.2	3.32	—	3.3	0.010	1.27	2.0	0.08	17.40	0.01	2.170	11.58	3.70	7.7	92.3	0.0	-4.83	0.79	0.82	2.87	3.3	0.003	0.66	0.0	0.04	18.10	0.00	2.486	4.19	1.69	5.4	94.6	0.0	-0.51	0.89	0.80	0.86	2.04	9429	1007	2	51	0	0	0	logfile
✔	6VRH	21368	2024-12-27	2020-02-07	3.3	3.68	3.56	3.6	0.004	0.60	0.0	0.04	13.50	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.59	0.0	0.04	15.30	0.00	2.542	8.11	3.85	5.1	94.9	0.0	-0.19	0.39	0.48	0.74	1.54	6142	764	4	0	5	0	0	logfile
✔	6VRA	21365	2024-12-29	2020-02-07	3.3	3.58	—	3.4	0.008	1.03	4.0	0.06	15.67	0.01	2.214	6.31	0.80	8.5	91.5	0.0	-3.93	0.84	0.85	2.53	3.4	0.003	0.61	0.0	0.04	16.43	0.00	2.143	7.54	1.36	6.2	93.8	0.0	-0.89	0.48	0.84	0.86	2.16	57744	7208	20	0	16	0	0	logfile
✔	6VRL	21370	2024-12-27	2020-02-07	3.8	3.98	4.22	3.9	0.004	0.63	0.0	0.04	13.97	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.70	0.0	0.04	16.05	0.00	2.520	12.54	2.31	5.1	94.9	0.0	-0.54	0.73	0.50	0.68	1.20	6141	764	4	0	4	0	0	logfile
✔	6VRK	21369	2024-12-27	2020-02-07	4.1	4.22	4.47	4.2	0.004	0.69	0.0	0.04	13.93	0.00	2.245	10.73	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.71	0.0	0.04	13.82	0.00	2.452	12.95	0.00	6.1	93.9	0.0	-0.82	1.24	0.47	0.68	—	6141	764	4	0	4	0	0	logfile
✔	6VQT	21356	2024-12-29	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.72	0.0	0.04	16.80	0.00	0.864	6.57	3.97	3.4	96.6	0.0	2.44	1.05	0.77	0.84	1.28	9144	1168	4	0	6	0	0	logfile
✔	6VQQ	21354	2024-12-29	2020-02-05	2.56	2.99	—	3.0	0.006	0.77	0.0	0.08	13.93	0.00	1.916	10.42	0.09	5.8	94.2	0.0	-3.82	0.56	0.73	3.45	3.0	0.004	0.63	0.0	0.04	16.44	0.00	2.471	8.70	3.22	3.3	96.7	0.0	0.65	1.21	0.56	0.76	2.81	10987	1399	5	0	0	0	0	logfile
✔	6XZQ	10665	2024-12-29	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.89	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.58	0.0	0.04	16.27	0.00	2.235	4.58	0.64	4.6	95.4	0.0	-0.31	0.77	0.90	0.82	1.90	56888	3492	8	19	0	0	28480	logfile
✔	6VQU	21357	2024-12-31	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.004	0.73	0.0	0.04	15.27	0.00	2.422	11.10	1.70	2.4	97.6	0.0	1.79	1.05	0.73	0.88	0.38	9156	1178	2	0	0	0	0	logfile

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