Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VQT	21356	2024-12-29	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.72	0.0	0.04	16.80	0.00	0.864	6.57	3.97	3.4	96.6	0.0	2.44	1.05	0.77	0.84	1.28	9144	1168	4	0	6	0	0	logfile
✔	6XZQ	10665	2024-12-29	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.89	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.58	0.0	0.04	16.27	0.00	2.235	4.58	0.64	4.6	95.4	0.0	-0.31	0.77	0.90	0.82	1.90	56888	3492	8	19	0	0	28480	logfile
✔	6VPS	21316	2024-12-27	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.002	0.49	0.0	0.03	20.22	0.00	2.670	2.53	0.33	6.9	93.1	0.0	-3.81	1.19	0.48	0.87	6.54	2736	279	9	0	0	0	0	logfile
✔	6VQ6	21317	2024-12-30	2020-02-04	3.9	4.53	—	4.2	0.009	0.95	1.0	0.06	10.96	0.00	1.809	2.38	0.30	2.6	97.2	0.3	0.63	0.77	0.71	1.23	4.2	0.004	0.88	1.0	0.05	14.69	0.00	1.916	17.13	1.90	3.8	96.2	0.0	1.22	1.80	0.81	0.81	0.88	62385	8454	35	0	2	0	0	logfile
✔	6VQ7	21318	2024-12-30	2020-02-04	4.0	4.63	—	4.2	0.009	0.98	2.0	0.06	10.86	0.01	2.219	3.67	0.61	2.5	97.3	0.2	0.65	0.79	0.72	—	4.3	0.004	0.86	1.0	0.05	14.37	0.00	1.936	15.57	2.01	3.3	96.7	0.0	1.39	1.45	0.82	0.80	—	62325	8454	35	0	2	0	0	logfile
✔	6VQ8	21319	2024-12-30	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.71	0.00	2.220	3.69	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.005	0.87	0.0	0.05	14.54	0.00	2.423	18.15	2.28	3.6	96.3	0.0	1.39	2.56	0.81	0.81	1.01	60714	8451	35	0	1	0	0	logfile
✔	6XZC	10658	2024-12-30	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.003	0.52	0.0	0.03	15.33	0.00	2.454	3.82	0.44	0.5	99.5	0.0	5.21	1.09	0.72	0.85	0.89	13279	1694	7	0	0	0	0	logfile
✔	6LVC	0989	2024-12-30	2020-02-02	3.0	3.09	2.94	3.0	0.011	1.00	0.0	0.07	9.66	0.01	1.831	3.86	0.48	5.8	94.2	0.0	-2.79	0.80	0.89	5.99	3.1	0.006	0.66	0.0	0.05	14.70	0.01	1.948	4.59	2.32	4.7	95.3	0.0	-0.54	2.21	0.80	0.91	4.77	14138	1772	8	0	2	2	0	logfile
✔	6XYQ	10652	2024-12-27	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.007	0.62	0.0	0.05	15.15	0.00	2.461	6.12	1.43	3.4	96.6	0.0	-3.42	0.36	0.44	0.84	4.73	4955	725	10	0	0	0	0	logfile
✔	6XYP	10651	2024-12-27	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.004	0.53	0.0	0.05	15.86	0.00	2.609	3.46	3.27	1.8	98.2	0.0	-3.25	1.19	0.45	0.84	4.73	4955	725	10	0	0	0	0	logfile
✔	6XYo	10650	2024-12-27	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.010	0.73	0.0	0.06	17.77	0.00	2.548	2.67	4.44	4.5	95.5	0.0	-1.90	0.91	0.48	0.91	4.86	5490	800	10	0	0	0	0	logfile
✔	6XYE	10649	2024-12-29	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.020	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.76	0.0	0.05	12.53	0.00	2.553	11.51	0.00	6.2	93.8	0.0	-1.45	1.39	0.72	0.70	—	9834	1293	6	0	0	0	0	logfile
✔	6VN7	21249	2024-12-28	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.80	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.002	0.55	0.0	0.04	13.73	0.00	2.485	5.20	2.00	1.6	98.4	0.0	1.23	0.72	0.56	0.73	1.54	8620	1052	7	0	10	0	0	logfile
✔	6VMS	21243	2024-12-28	2020-01-28	3.8	3.48	—	3.7	0.005	0.70	0.0	0.04	11.04	0.00	2.082	5.72	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.003	0.69	0.0	0.04	15.74	0.00	2.371	10.09	2.96	3.0	97.0	0.0	0.27	1.06	0.65	0.84	2.17	8953	1135	6	0	1	0	0	logfile
✔	6VM3	21237	2024-12-31	2020-01-27	3.07	3.76	3.02	3.5	0.017	1.85	0.0	0.09	23.00	0.03	2.282	5.90	0.92	3.1	96.9	0.0	1.08	0.80	0.86	3.70	3.5	0.003	0.68	0.0	0.04	14.81	0.00	2.577	5.84	2.58	3.4	96.6	0.0	2.00	0.49	0.77	0.88	3.59	15180	1810	18	0	15	0	0	logfile
✔	6XWR	10636	2024-12-29	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.004	0.99	1.0	0.05	14.04	0.00	1.867	11.94	0.70	2.7	97.3	0.0	1.12	1.14	0.70	0.83	1.33	9564	1278	3	0	0	0	0	logfile
✔	6XWP	10634	2024-12-29	2020-01-24	3.38	3.76	—	3.7	0.007	0.72	0.0	0.04	12.99	0.01	2.107	10.70	0.00	6.1	93.9	0.0	-3.13	0.70	0.84	1.88	3.7	0.003	0.67	0.0	0.04	14.95	0.01	2.366	9.38	2.49	3.6	96.4	0.0	1.35	0.46	0.71	0.84	1.09	9552	1280	5	0	0	0	0	logfile
✔	6XWQ	10635	2024-12-29	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.81	0.0	0.04	15.53	0.00	2.543	11.59	1.79	2.9	97.1	0.0	0.95	1.17	0.72	0.84	0.74	9572	1281	6	0	0	0	0	logfile
✔	6XWN	10632	2024-12-29	2020-01-24	3.47	4.19	—	3.9	0.004	0.61	0.0	0.04	15.89	0.00	2.121	11.01	8.00	3.3	96.7	0.0	-2.83	0.70	0.77	1.38	3.9	0.003	0.69	0.0	0.04	15.96	0.00	2.471	11.67	2.50	2.5	97.5	0.0	1.58	0.55	0.72	0.85	0.88	9547	1276	5	0	2	0	0	logfile
✔	6XWo	10633	2024-12-29	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.003	0.92	0.0	0.04	15.05	0.00	2.470	8.72	2.09	2.9	97.1	0.0	0.94	0.50	0.73	0.86	1.12	9555	1281	3	0	0	0	0	logfile

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