Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iZV	61043	2024-12-30	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.004	0.83	0.0	0.05	14.07	0.00	2.380	13.49	3.29	4.6	95.4	0.0	0.30	1.23	0.90	0.82	1.09	14118	1857	4	0	0	0	0	logfile
✔	9GC3	51228	2024-12-31	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.002	0.54	0.0	0.04	18.12	0.00	2.496	4.69	0.60	1.4	98.6	0.0	0.89	1.02	0.88	0.90	3.89	15046	1673	5	80	0	0	0	logfile
✔	9iZX	61045	2024-12-30	2024-08-01	3.0	4.21	3.05	3.5	0.002	0.51	0.0	0.04	8.95	0.00	1.332	4.11	0.46	2.3	97.6	0.1	-0.23	0.85	0.69	1.91	3.6	0.004	0.90	0.0	0.05	13.74	0.01	2.523	11.48	1.97	3.6	96.3	0.1	0.85	1.19	0.90	0.86	1.77	14152	1857	4	0	0	0	0	logfile
✔	9iZW	61044	2024-12-31	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.007	0.82	0.0	0.05	16.85	0.01	2.481	11.76	4.26	8.1	91.9	0.0	-1.59	0.72	0.73	0.81	1.27	15196	1996	4	0	0	0	0	logfile
✔	9CX9	45982	2024-12-27	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.64	0.0	0.04	16.26	0.00	2.560	5.61	5.45	3.8	96.2	0.0	-0.85	0.50	0.80	0.80	2.17	4631	609	5	0	0	0	0	logfile
✔	9CXJ	45993	2024-12-29	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.62	0.0	0.04	16.51	0.00	2.011	9.18	1.51	3.2	96.8	0.0	1.54	0.36	0.65	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CX3	45977	2024-12-27	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.69	0.0	0.04	17.04	0.00	2.499	12.39	5.58	5.4	94.6	0.0	-1.80	0.58	0.74	0.71	2.02	5626	720	6	0	0	0	0	logfile
✔	9GAW	51190	2024-12-31	2024-07-29	2.9	3.95	—	3.2	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.86	0.80	1.97	3.2	0.004	0.68	0.0	0.04	15.69	0.00	2.256	9.06	1.07	3.2	96.8	0.0	1.68	3.24	0.91	0.88	1.90	66640	8600	24	0	6	0	0	logfile
✔	9GAW	13931	2024-12-31	2024-07-29	2.9	2.23	2.97	2.7	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.79	0.79	2.07	2.0	0.005	0.79	3.0	0.04	17.45	0.00	2.142	10.80	3.08	3.1	96.9	0.0	1.32	0.55	0.79	0.81	2.24	66640	8600	24	0	6	0	0	logfile
✔	9CV6	45956	2024-12-30	2024-07-28	3.12	3.70	3.15	3.6	0.004	0.85	0.0	0.06	11.33	0.01	2.314	3.62	0.00	2.3	97.7	0.0	-1.51	0.87	0.87	4.36	3.5	0.003	0.59	0.0	0.04	13.88	0.00	2.499	4.29	0.79	2.6	97.4	0.0	0.88	1.13	0.84	0.89	3.13	12030	1520	2	0	0	0	0	logfile
✔	9G9V	51158	2024-12-27	2024-07-25	3.32	3.86	3.33	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.57	0.0	0.04	12.90	0.00	2.606	3.22	1.58	1.2	98.8	0.0	4.15	1.01	0.50	0.78	3.01	4073	522	4	0	9	0	0	logfile
✔	9CTT	45918	2024-12-31	2024-07-25	2.5	2.88	2.59	2.8	0.003	0.56	0.0	0.04	16.17	0.00	2.059	8.28	1.53	1.7	98.3	0.1	1.23	0.66	0.89	3.72	2.8	0.004	0.54	0.0	0.04	16.56	0.00	2.252	6.83	1.71	1.8	98.2	0.1	1.00	0.23	0.66	0.89	3.65	15595	1880	10	0	5	0	0	logfile
✔	9G9X	51160	2024-12-27	2024-07-25	3.13	3.60	3.11	3.5	0.007	0.75	0.0	0.05	11.30	0.01	2.404	1.01	0.00	0.8	99.2	0.0	-1.06	0.49	0.78	4.25	3.5	0.002	0.54	0.0	0.04	13.19	0.00	2.600	2.02	1.03	2.9	97.1	0.0	4.24	0.94	0.47	0.76	2.58	3955	488	4	0	7	0	0	logfile
✔	9G9W	51159	2024-12-27	2024-07-25	2.48	3.01	2.57	3.0	0.007	0.72	0.0	0.05	11.38	0.01	2.295	1.11	0.00	0.4	99.6	0.0	0.55	0.47	0.78	5.21	3.0	0.004	0.48	0.0	0.04	13.52	0.00	2.644	2.35	0.00	1.2	98.8	0.0	4.61	0.90	0.49	0.80	3.04	4089	516	4	0	9	0	0	logfile
✔	9iVG	60927	2024-12-28	2024-07-23	3.0	3.73	3.06	3.5	0.003	0.56	0.0	0.04	18.21	0.00	2.127	7.87	3.98	5.1	94.7	0.2	0.58	0.75	0.87	2.24	3.5	0.004	0.72	0.0	0.04	17.92	0.00	2.421	7.28	3.18	5.2	94.6	0.2	0.87	0.70	0.67	0.80	2.23	9325	1170	6	0	0	0	0	logfile
✔	9iVK	60929	2024-12-27	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.86	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.56	0.0	0.04	16.99	0.00	2.481	7.23	2.29	2.0	98.0	0.0	2.73	1.25	0.64	0.81	2.45	4077	507	4	0	1	0	0	logfile
✔	9iUZ	60916	2024-12-28	2024-07-22	3.19	3.81	3.34	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.62	0.0	0.04	18.21	0.00	2.456	6.43	2.99	3.4	96.6	0.0	1.20	0.95	0.75	0.83	1.35	8349	1061	5	0	2	0	0	logfile
✔	9iU1	60886	2024-12-29	2024-07-20	4.3	4.47	4.35	4.4	0.003	0.60	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.66	0.0	0.04	14.84	0.00	2.426	9.09	0.00	8.3	91.7	0.0	-0.37	0.69	0.65	0.69	—	6603	790	8	0	14	0	0	logfile
✔	9G5K	51088	2024-12-27	2024-07-17	2.87	2.98	2.85	2.9	0.004	0.60	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.62	0.00	2.497	5.46	3.29	2.6	97.4	0.0	1.98	1.22	0.63	0.84	2.74	4040	507	3	0	1	0	0	logfile
✔	9Coo	45787	2024-12-28	2024-07-17	3.73	4.04	3.71	3.9	0.003	0.66	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.003	0.72	0.0	0.04	16.95	0.00	2.252	10.06	5.42	6.9	93.1	0.0	-1.98	1.70	0.78	0.75	0.64	7493	1028	8	0	6	0	0	logfile

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