Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZTR	60470	2024-12-30	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.67	0.0	0.04	18.51	0.00	2.467	11.00	3.49	4.5	95.5	0.0	-0.34	1.13	0.62	0.61	0.73	14072	1694	4	0	0	0	0	logfile
✔	9C6J	45248	2024-12-28	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.66	0.0	0.04	24.41	0.01	1.886	7.82	0.00	0.0	0.0	0.0	—	0.31	0.87	0.90	—	8345	0	2	387	21	0	0	logfile
✔	9C6K	45249	2024-12-27	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.006	0.67	0.0	0.04	25.57	0.00	1.882	12.96	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	8ZSZ	60435	2024-12-27	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.8	0.003	0.68	0.0	0.04	16.54	0.00	1.956	14.47	2.42	3.1	96.9	0.0	1.63	0.74	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	9C58	45207	2024-12-28	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.003	0.65	0.0	0.04	7.29	0.00	1.986	1.12	0.00	8.3	91.7	0.0	0.01	1.60	0.75	0.72	—	7954	1590	6	0	2	0	0	logfile
✔	9C5Q	45218	2024-12-30	2024-06-06	3.1	3.69	3.23	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.003	0.61	0.0	0.04	19.61	0.00	2.521	5.60	4.28	10.1	89.8	0.1	-1.22	0.39	0.72	0.77	1.62	12324	1550	4	28	0	0	0	logfile
✔	9C5A	45209	2024-12-31	2024-06-06	4.2	3.06	4.22	4.2	0.014	1.48	0.0	0.07	12.26	0.01	1.887	4.97	0.45	3.5	96.3	0.2	0.19	0.66	0.71	—	4.1	0.004	0.71	0.0	0.05	13.46	0.00	1.909	11.29	0.00	3.7	96.3	0.0	0.98	1.70	0.66	0.72	—	15806	1978	10	0	4	0	0	logfile
✔	9C5C	45214	2024-12-29	2024-06-06	3.6	2.97	3.61	3.9	0.004	0.73	0.0	0.04	15.74	0.00	2.202	20.64	0.08	2.7	97.3	0.0	0.79	0.67	0.57	0.91	3.9	0.004	0.89	0.0	0.05	17.37	0.01	2.416	20.16	3.52	3.2	96.8	0.0	0.85	1.13	0.68	0.68	0.72	11364	1429	4	0	0	0	0	logfile
✔	8ZSB	60410	2024-12-27	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.003	0.56	0.0	0.04	16.03	0.00	1.877	9.41	0.95	3.3	96.7	0.0	2.63	0.51	0.60	0.82	1.93	4798	614	4	0	2	0	0	logfile
✔	8ZSJ	60417	2024-12-28	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.004	0.61	0.0	0.04	15.64	0.00	2.485	7.05	1.27	2.7	97.3	0.0	1.02	1.00	0.62	0.85	3.38	8118	1035	6	0	1	4	0	logfile
✔	9FLP	50537	2024-12-26	2024-06-05	3.8	4.19	3.92	4.1	0.017	1.53	42.0	0.07	9.13	0.02	1.546	6.30	0.00	1.5	98.5	0.0	0.95	0.82	0.84	1.74	4.1	0.003	0.60	0.0	0.04	11.29	0.00	2.576	4.89	1.17	2.6	97.4	0.0	0.88	1.81	0.84	0.88	1.95	45101	6384	7	0	0	0	0	logfile
✔	8ZSP	60423	2024-12-28	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.005	0.66	0.0	0.05	16.29	0.00	2.530	9.85	1.62	3.1	96.9	0.0	0.59	1.21	0.76	0.80	2.42	8076	1033	6	0	1	0	0	logfile
✔	9FLY	50543	2024-12-26	2024-06-05	3.7	4.03	3.86	4.0	0.018	1.56	26.0	0.08	9.82	0.01	1.048	9.93	0.00	2.8	97.2	0.0	0.76	0.79	0.85	1.90	4.0	0.003	0.63	0.0	0.04	12.48	0.00	2.526	5.75	1.67	2.8	97.2	0.0	0.15	0.66	0.82	0.88	2.70	43463	6013	7	0	0	0	0	logfile
✔	8ZRR	60403	2024-12-27	2024-06-05	3.61	2.82	3.14	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.8	0.003	0.78	0.0	0.05	16.51	0.00	2.385	7.23	4.04	3.1	96.9	0.0	1.78	0.74	0.58	0.72	1.73	4065	516	4	0	0	0	0	logfile
✔	8ZRT	60404	2024-12-27	2024-06-05	3.62	3.79	3.44	3.8	0.003	0.69	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.72	0.0	0.04	16.69	0.01	2.580	12.92	8.06	4.1	95.9	0.0	1.10	0.32	0.47	0.72	1.79	2322	303	2	0	0	0	0	logfile
✔	9FLU	50539	2024-12-31	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.030	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.003	0.54	0.0	0.05	10.95	0.00	2.345	4.63	3.34	1.5	98.5	0.0	1.74	1.21	0.70	0.84	3.78	16520	2324	7	0	0	0	0	logfile
✔	9C4E	45183	2024-12-31	2024-06-04	2.73	3.23	2.73	3.1	0.003	0.53	0.0	0.04	16.12	0.00	2.218	6.74	0.82	2.0	98.0	0.0	0.56	0.61	0.76	3.24	3.1	0.004	0.56	0.0	0.04	16.39	0.00	2.482	5.75	1.33	2.1	97.9	0.0	0.46	1.06	0.68	0.83	3.57	14760	1932	4	0	0	0	0	logfile
✔	9C4o	45192	2024-12-29	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	2.2	0.004	0.63	0.0	0.04	16.65	0.01	2.144	4.77	0.92	2.0	98.0	0.0	-0.02	0.86	0.61	0.81	6.74	10166	661	2	0	2	111	4883	logfile
✔	8ZRH	60396	2024-12-28	2024-06-04	3.6	2.84	3.64	2.1	0.007	0.93	0.0	0.05	16.05	0.01	2.383	9.08	1.82	3.8	95.9	0.3	0.45	0.61	0.67	0.80	2.2	0.003	0.81	0.0	0.05	17.06	0.01	2.497	11.22	3.64	4.2	95.7	0.1	0.14	1.32	0.63	0.72	1.25	8036	1019	8	0	0	0	0	logfile
✔	9C4D	45182	2024-12-30	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.59	0.0	0.04	22.97	0.00	1.390	10.74	0.00	1.4	98.6	0.0	2.57	1.89	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile

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