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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9CB1 | 45412 | 2025-06-13 | 2024-06-18 | 4.24 | 6.55 | 4.24 | 4.4 | 0.006 | 0.87 | 0.0 | 0.06 | 10.32 | 0.01 | 2.256 | 6.86 | 0.72 | 3.5 | 96.3 | 0.2 | -0.53 | 0.84 | 0.80 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 11.48 | 0.00 | 2.499 | 13.29 | 0.00 | 3.1 | 96.9 | 0.0 | 0.42 | 3.12 | 0.87 | 0.85 | — | 15105 | 1968 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 9CBB | 45421 | 2025-03-12 | 2024-06-18 | 4.15 | 4.29 | 4.00 | 4.2 | 0.007 | 0.92 | 0.0 | 0.04 | 14.26 | 0.01 | 2.221 | 3.12 | 0.00 | 6.2 | 93.8 | 0.0 | -2.08 | 0.49 | 0.73 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.04 | 0.00 | 2.379 | 7.88 | 0.00 | 7.3 | 92.7 | 0.0 | -0.08 | 0.96 | 0.49 | 0.74 | — | 7356 | 470 | 2 | 0 | 1 | 0 | 3733 | logfile |
✔ | 8ZZ0 | 60585 | 2025-05-12 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 17.80 | 0.00 | 2.521 | 7.78 | 1.91 | 1.8 | 98.2 | 0.0 | 3.63 | 1.39 | 0.67 | 0.82 | 0.53 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZZ0 | 60585 | 2025-04-29 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 17.85 | 0.00 | 2.506 | 7.28 | 1.17 | 1.6 | 98.4 | 0.0 | 3.88 | 1.40 | 0.66 | 0.78 | 0.51 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZZ0 | 60585 | 2025-03-13 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 17.85 | 0.00 | 2.506 | 7.28 | 1.17 | 1.6 | 98.4 | 0.0 | 3.88 | 1.40 | 0.66 | 0.78 | 0.51 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZZ0 | 60585 | 2025-01-15 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 17.80 | 0.00 | 2.521 | 7.78 | 1.91 | 1.8 | 98.2 | 0.0 | 3.63 | 1.39 | 0.67 | 0.82 | 0.53 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZZ0 | 60585 | 2025-02-13 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 17.80 | 0.00 | 2.521 | 7.78 | 1.91 | 1.8 | 98.2 | 0.0 | 3.63 | 1.39 | 0.67 | 0.82 | 0.53 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZZ0 | 60585 | 2025-06-07 | 2024-06-18 | 3.43 | 3.30 | 3.36 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.58 | 0.01 | 2.123 | 9.76 | 0.00 | 1.9 | 98.1 | 0.0 | 2.96 | 0.67 | 0.80 | 0.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 17.85 | 0.00 | 2.506 | 7.28 | 1.17 | 1.6 | 98.4 | 0.0 | 3.88 | 1.40 | 0.66 | 0.78 | 0.51 | 8914 | 1174 | 10 | 0 | 0 | 3 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-04-29 | 2024-06-18 | 3.16 | 2.82 | 3.04 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.49 | 0.0 | 0.04 | 18.11 | 0.00 | 2.526 | 7.45 | 1.70 | 2.0 | 98.0 | 0.0 | 4.18 | 1.38 | 0.56 | 0.76 | 1.35 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-02-13 | 2024-06-18 | 3.16 | 2.82 | 3.05 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 18.11 | 0.00 | 2.487 | 8.16 | 1.70 | 1.9 | 98.1 | 0.0 | 3.98 | 1.38 | 0.56 | 0.78 | 1.51 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-06-07 | 2024-06-18 | 3.16 | 2.82 | 3.04 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.49 | 0.0 | 0.04 | 18.11 | 0.00 | 2.526 | 7.45 | 1.70 | 2.0 | 98.0 | 0.0 | 4.18 | 1.38 | 0.56 | 0.76 | 1.35 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-05-12 | 2024-06-18 | 3.16 | 2.82 | 3.04 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 18.11 | 0.00 | 2.487 | 8.16 | 1.70 | 1.9 | 98.1 | 0.0 | 3.98 | 1.38 | 0.56 | 0.78 | 1.51 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-03-13 | 2024-06-18 | 3.16 | 2.82 | 3.04 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.49 | 0.0 | 0.04 | 18.11 | 0.00 | 2.526 | 7.45 | 1.70 | 2.0 | 98.0 | 0.0 | 4.18 | 1.38 | 0.56 | 0.76 | 1.35 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYZ | 60584 | 2025-01-15 | 2024-06-18 | 3.16 | 2.82 | 3.05 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 18.05 | 0.00 | 2.087 | 8.66 | 0.11 | 2.1 | 97.9 | 0.0 | 3.30 | 0.60 | 0.80 | 1.20 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 18.11 | 0.00 | 2.487 | 8.16 | 1.70 | 1.9 | 98.1 | 0.0 | 3.98 | 1.38 | 0.56 | 0.78 | 1.51 | 8918 | 1174 | 12 | 0 | 2 | 5 | 0 | logfile |
✔ | 8ZYN | 60573 | 2025-01-14 | 2024-06-18 | 3.27 | 3.51 | 3.26 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 15.25 | 0.00 | 2.256 | 5.78 | 0.86 | 2.1 | 97.9 | 0.0 | 1.18 | 0.59 | 0.83 | 1.15 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.56 | 0.00 | 2.623 | 5.34 | 2.88 | 2.5 | 97.5 | 0.0 | 1.33 | 0.34 | 0.59 | 0.84 | 1.37 | 6640 | 840 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZYQ | 60576 | 2024-12-27 | 2024-06-18 | 3.18 | 3.41 | 3.17 | 3.4 | 0.005 | 0.59 | 0.0 | 0.04 | 16.95 | 0.00 | 2.234 | 6.78 | 0.46 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.85 | 2.58 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 16.19 | 0.00 | 2.535 | 5.53 | 2.28 | 2.7 | 97.3 | 0.0 | 1.80 | 0.36 | 0.55 | 0.83 | 2.58 | 6329 | 796 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ZYQ | 60576 | 2024-11-14 | 2024-06-18 | 3.18 | 3.41 | 3.17 | 3.4 | 0.005 | 0.59 | 0.0 | 0.04 | 16.95 | 0.00 | 2.234 | 6.78 | 0.46 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.85 | 2.58 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 16.19 | 0.00 | 2.535 | 5.53 | 2.28 | 2.7 | 97.3 | 0.0 | 1.80 | 0.36 | 0.55 | 0.83 | 2.58 | 6329 | 796 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ZYQ | 60576 | 2024-10-10 | 2024-06-18 | 3.18 | 3.41 | 3.17 | 3.4 | 0.005 | 0.59 | 0.0 | 0.04 | 16.95 | 0.00 | 2.234 | 6.78 | 0.46 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.85 | 2.58 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 16.19 | 0.00 | 2.535 | 5.53 | 2.28 | 2.7 | 97.3 | 0.0 | 1.80 | 0.36 | 0.55 | 0.83 | 2.58 | 6329 | 796 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ZYQ | 60576 | 2024-09-24 | 2024-06-18 | 3.18 | 3.41 | 3.17 | 3.4 | 0.005 | 0.59 | 0.0 | 0.04 | 16.95 | 0.00 | 2.234 | 6.78 | 0.46 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.85 | 2.58 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 16.19 | 0.00 | 2.535 | 5.53 | 2.28 | 2.7 | 97.3 | 0.0 | 1.80 | 0.36 | 0.55 | 0.83 | 2.58 | 6329 | 796 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ZYQ | 60576 | 2025-06-05 | 2024-06-18 | 3.18 | 3.41 | 3.17 | 3.4 | 0.005 | 0.59 | 0.0 | 0.04 | 16.95 | 0.00 | 2.234 | 6.78 | 0.46 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.85 | 2.58 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 16.22 | 0.00 | 2.514 | 5.69 | 2.73 | 2.7 | 97.3 | 0.0 | 1.68 | 0.37 | 0.56 | 0.85 | 2.67 | 6329 | 796 | 5 | 0 | 1 | 0 | 0 | logfile |