Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Yo4	39435	2024-12-30	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	20.04	0.00	2.009	6.90	4.20	7.8	92.2	0.1	-1.51	0.27	0.69	0.81	1.98	12698	1452	8	48	4	0	0	logfile
✔	8Yo4	39435	2024-11-17	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	20.04	0.00	2.009	6.90	4.20	7.8	92.2	0.1	-1.51	0.27	0.69	0.81	1.98	12698	1452	8	48	4	0	0	logfile
✔	9ENC	19831	2024-08-02	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	8Yo4	39435	2024-10-12	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	20.04	0.00	2.009	6.90	4.20	7.8	92.2	0.1	-1.51	0.27	0.69	0.81	1.98	12698	1452	8	48	4	0	0	logfile
✔	8Yo4	39435	2025-01-18	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	19.99	0.00	2.030	7.14	3.88	7.6	92.3	0.1	-1.29	0.29	0.69	0.81	1.77	12698	1452	8	48	4	0	0	logfile
✔	9B0K	44045	2024-09-30	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.970	6.70	0.54	3.8	96.2	0.0	1.24	0.43	0.84	0.84	1.65	23896	3020	14	0	12	0	0	logfile
✔	9B0K	44045	2024-08-08	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.970	6.70	0.54	3.8	96.2	0.0	1.24	0.43	0.84	0.84	1.65	23896	3020	14	0	12	0	0	logfile
✔	9ENC	19831	2024-09-23	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	8Yo7	39437	2024-11-16	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.61	0.0	0.04	20.58	0.00	2.057	10.18	3.72	5.2	94.8	0.0	-0.63	0.36	0.73	0.80	1.67	11395	1310	14	38	4	2	0	logfile
✔	8Yo7	39437	2025-01-17	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.57	0.0	0.04	20.54	0.00	2.058	9.69	3.19	4.8	95.2	0.0	-0.50	0.35	0.72	0.79	1.64	11395	1310	14	38	4	2	0	logfile
✔	8Yo7	39437	2024-12-29	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.61	0.0	0.04	20.58	0.00	2.057	10.18	3.72	5.2	94.8	0.0	-0.63	0.36	0.73	0.80	1.67	11395	1310	14	38	4	2	0	logfile
✔	8Yo7	39437	2024-10-12	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.61	0.0	0.04	20.58	0.00	2.057	10.18	3.72	5.2	94.8	0.0	-0.63	0.36	0.73	0.80	1.67	11395	1310	14	38	4	2	0	logfile
✔	8Yo3	39434	2024-11-16	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.63	0.0	0.04	17.03	0.00	2.492	9.82	3.06	5.0	95.0	0.0	0.00	1.47	0.73	0.80	1.66	11514	1430	4	0	0	0	0	logfile
✔	8Yo3	39434	2025-01-17	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.60	0.0	0.04	17.01	0.00	2.361	8.95	2.66	4.9	95.1	0.0	0.19	1.77	0.73	0.80	1.68	11514	1430	4	0	0	0	0	logfile
✔	9ENB	19830	2024-12-28	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENB	19830	2024-11-15	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENB	19830	2024-10-10	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENB	19830	2024-09-24	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENB	19830	2024-08-03	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENB	19830	2025-03-12	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.004	0.52	0.0	0.04	22.12	0.00	2.083	3.15	0.54	4.2	95.8	0.0	0.67	0.87	0.85	0.87	3.73	8264	636	6	144	6	0	0	logfile

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